Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0319 ATGCCGCCACTTTCTCCAACACCGACACCGCCAAAAAAGAAGCGAAGCCTCGCTGGAATGCCAGATCCAAATGCTGAAGTAATCGCTTTATCACCAAAAACTCTGTTAACGACGAACCGTTTCATATGTGAGATCTGCAACAAAGGATTTCAACGGGAACAGAATCTTCAACTTCACCGGCGAGGACATAACATGCCGTGGAAGCTTCGGCAGCGAGCGAGTGAAGAAATCCGCAAGAAAGTGTACGTATGTCCTGAACCTTCTTGTGTACACCACAATCCGTCAAGAGCGTTAGGTGATCTGACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAACGTTGTTCTAAAAATTACGCTGTCAAATCTGATTGTAAAGCACATATGAAGAGTTGTGGAAATAGAGAGTATAAATGTGATTGTGGCTCCTTCTTCTCTAGGAGAGATAGTTTTGTTACGCACAAAGCGTTCTGTGAAGTGTTAGCGGAAAAGAGTGCGAAAGAAGGTAGCAATGTTGTGGGTTCATCTGCACCTCCAACGCCTCCGCTTACTCCATCAACAATATCTGTGGCGTCTCCTCCTACTTTGTCCTCTGTTCACAACTCAGATATTGCAGAAAACCCAACAAAGCTGTCACCTCCATCTTCAAATGCTTCCACTTCTACCAGTTGTTGTTCCTCATTCAGCAGCCTCATGACAAGCTTGGCTCACTCGGATTGCCCCACCACATCTTTCTCTGTCACAGAACCGACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACAACAACAACAATGATCAGTACCCTCTTCCCCACTACAGTCCTGCATTATCTGCCACTGCATTACTCCAAAAAGCTGCTCAAATGGGTTCACGTTCATCCAATTCATCCTTGCTTCATGCTTTAGGCTTGAAAGAAAACAGTGTCAGTATTAGCAGCACCACTTCAGATAAATGGAATGTCCATGGTAATGTAAAACAAGAAAATGAGCTTGTGACAGATTACCTTGGGCTTGGACTACTACCCTGTGGGAATGAGATTATGGGCTCATCGGACCAGCCCATGACCCGTGATCTTCTTGGTCTAAGCATGGGATTGGGTAGAGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTCGATTCATCCGCATAA 1197 0.4495 MPPLSPTPTPPKKKRSLAGMPDPNAEVIALSPKTLLTTNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRASEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKSDCKAHMKSCGNREYKCDCGSFFSRRDSFVTHKAFCEVLAEKSAKEGSNVVGSSAPPTPPLTPSTISVASPPTLSSVHNSDIAENPTKLSPPSSNASTSTSCCSSFSSLMTSLAHSDCPTTSFSVTEPTTLSLFTPLYLSNNNNNNNDQYPLPHYSPALSATALLQKAAQMGSRSSNSSLLHALGLKENSVSISSTTSDKWNVHGNVKQENELVTDYLGLGLLPCGNEIMGSSDQPMTRDLLGLSMGLGRDDDLSALLTSFGGNFDSSA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0319 398 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Tpr7g0319 398 Gene3D Classic Zinc Finger 41 86 - -
Tpr7g0319 398 SUPERFAMILY beta-beta-alpha zinc fingers 40 137 IPR036236 -
Tpr7g0319 398 Gene3D Classic Zinc Finger 95 175 - -
Tpr7g0319 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Tpr7g0319 398 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 265 - -
Tpr7g0319 398 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 274 395 - -
Tpr7g0319 398 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 274 395 - -
Tpr7g0319 398 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 265 - -
Tpr7g0319 398 MobiDBLite consensus disorder prediction 1 23 - -
Tpr7g0319 398 Pfam Zinc-finger double-stranded RNA-binding 41 63 IPR022755 -
Tpr7g0319 398 SMART c2h2final6 41 63 IPR013087 -
Tpr7g0319 398 SMART c2h2final6 117 137 IPR013087 -
Tpr7g0319 398 SMART c2h2final6 82 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0319 Tpr-Chr7 2574342 2577649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0319 12 392 IDZ Gene Family AT3G50700 48.889 8.08e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g0319 zf-C2H2_jaz 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0319 K25869 - gmx:100800089 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0319 7 2574342 2577649 Tpr7g0319 7 2574342 2577649 ECH