Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0311 ATGTCAGGCGGAAAGAAAACCCGAGGTCGTCAAAAGATTGAAATAAAAAAGATAAGCAATGAAAGAAGCATGCAAGTTACCTTCTCGAAGCGCCGTAACGGGCTCTTCAAGAAAGCTCATGAGCTTTTCGCTCTTTGTGGGGCATATGTTGCTCTAATCATATTTTCACCTACTGGGAAGGTTTTTTCCTTTGGTTACCCCGATCTTTATACGGTCATAGATCGTTATTTATCGCGGGTCCCACCTGTAAACAACAACGTTAGGCAATTCATTGAGGCTTTTCGTAGCACCAACGTGCGCGAACTCAATGCTCAGTTGACTCTGGCCAATGATGCACTAGATCGCGAAAAAAGGCGTGGTGATGATCTGAGTCGTCTTTGCAAGATGATTGAGGATCCATCTTGGTGGGCTTCACCCGTTGACGGATTGAACAAGGATCAACTTGAATTGTTGAAGATGGCTTTGGAGGAGCTGAATAAAAATATTGTTGAACCAAATGATAGGCTTGAAATCTTGGGTGCTCCTACCCAAACTCAACAGGCTCAAATGTCTTCACCTTAG 561 0.4385 MSGGKKTRGRQKIEIKKISNERSMQVTFSKRRNGLFKKAHELFALCGAYVALIIFSPTGKVFSFGYPDLYTVIDRYLSRVPPVNNNVRQFIEAFRSTNVRELNAQLTLANDALDREKRRGDDLSRLCKMIEDPSWWASPVDGLNKDQLELLKMALEELNKNIVEPNDRLEILGAPTQTQQAQMSSP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0311 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 Gene3D - 20 100 IPR036879 GO:0003677|GO:0046983
Tpr7g0311 186 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr7g0311 186 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr7g0311 186 Coils Coil 99 119 - -
Tpr7g0311 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 172 - -
Tpr7g0311 186 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Tpr7g0311 186 PANTHER MADS BOX PROTEIN 7 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0311 Tpr-Chr7 2520803 2521363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0311 5 160 Type I MADS-box Gene Family AT5G60440 47.799 2.40e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr7g0311 SRF-TF 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0311 - - mtr:MTR_1g106070 223.787