Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0263 ATGATTATGATGATGAGGCGTAGTGGAGGAATGAATTGTCAGGATTGTGGGAATCAAGCAAAAAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACACATGTTAAGAGTACTTGGGTTCCAGCAGCTAAACGCCGTGAAAGACAACAACAACATCAACATCTCTCTATGTTACAACAACAACAACACTTTCATCGTCCTAAACGACACTCACTCAATCAACAAGGTGCACCCTCTCTTTCCATCCCTACCACAGGGTTTGAGTTGGGACAATTCCCACCTGAGGTGAGTTCTCCAGGAGTAACGTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGATCAATGTGCATATCAAACGGCTGTGAACATAGGAGGACATGTTTTCAAAGGAATTCTCTATGATCAAGGTCCTCCAAGTCTTTACACTAGTACTGCACCTATTCATGAGGGTTCTTCTGGTGGAGGAGGTCATCATCAACCTCAACAACTTGATTTCTTAACTGCTGCAACAACAGCTACAACCACCGGTATCTCGTTCGACCCTTCACTTTACTCCGCTCCACTAAATGCTTTCATGGCAGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTGA 660 0.4379 MIMMMRRSGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQHQHLSMLQQQQHFHRPKRHSLNQQGAPSLSIPTTGFELGQFPPEVSSPGVTFRCVRVSSLDGPDHDQCAYQTAVNIGGHVFKGILYDQGPPSLYTSTAPIHEGSSGGGGHHQPQQLDFLTAATTATTTGISFDPSLYSAPLNAFMAAAGTQFFHPQHPN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0263 219 MobiDBLite consensus disorder prediction 55 87 - -
Tpr7g0263 219 Pfam Domain of unknown function (DUF702) 10 150 - -
Tpr7g0263 219 PANTHER PROTEIN SHI RELATED SEQUENCE 7 6 215 - -
Tpr7g0263 219 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 215 IPR007818 GO:0003700|GO:0006355
Tpr7g0263 219 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 12 54 IPR006510 -
Tpr7g0263 219 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 100 150 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0263 Tpr-Chr7 2170400 2172568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0263 3 215 C2H2 Transcription Factor Family AT1G75520 46.899 5.41e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr7g0263 DUF702 1.8e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0263 - - gmx:100805274 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0263 7 2170400 2172568 Tpr3g2360 3 22379930 22382092 ECH
Tpr7g0263 7 2170400 2172568 Tpr7g0263 7 2170400 2172568 ECH
Tpr1g3826 1 42265885 42268619 Tpr7g0263 7 2170400 2172568 PCT