Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0261 ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACCAACCGACAAGTGACTTATTCGAAACGCAGGAATGGTCTTTTCAAGAAAGCTAATGAGCTTACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTCTCTAGCACCGGCAAGCTTCATGAATACATTAGCCCCTCTATCTCAACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTAGGAATTGATCTGTGGAATTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAGGGAGATTAGGCTGAGAATGGGAGATTGTTCGAACGATCTGAGTATGGAAGAACTGAGGTTACTTGAGGAAGAAATGGACAAATCCGTTAAGGTTATTCGTGAGCGTAAGTTTAAGGTGATAACTAATCAGATTGACACCCAAAGGAAGAAGTTTAACAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTATGAAATGATGGACAATGGAGGAGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCGCGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAACCCCCACAACGGACCACCTGCTGCCTCTGATCTCACCACTTACCCTTTACTTTTCTAG 687 0.4192 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSISTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRREIRLRMGDCSNDLSMEELRLLEEEMDKSVKVIRERKFKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRYEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGPPAASDLTTYPLLF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0261 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Tpr7g0261 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 PANTHER APETALA3 1 225 - -
Tpr7g0261 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 Coils Coil 151 171 - -
Tpr7g0261 228 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Tpr7g0261 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g0261 228 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Tpr7g0261 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tpr7g0261 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr7g0261 228 Coils Coil 77 104 - -
Tpr7g0261 228 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0261 Tpr-Chr7 2131191 2135376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0261 1 227 MADS-box Gene Family AT3G54340 55.844 1.65e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr7g0261 K-box 4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0261 K09264 - gmx:547720 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0261 7 2131191 2135376 Tpr7g0261 7 2131191 2135376 ECH