Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0235 ATGTCAATTCCAAGCGAGAATCAAATTCAACATTTTCCCCAATTCAATTTCAATCTATTGCATTCCCCTTCTCCTCCTAACCCTTCTCCGTTTCCTGTTATGCATCCCTGTCAGAGTCCGAGAAATGAAATCAATAATGTCAACTTGAACACTGGTAGCAATGCTGAAGCATTTCCCAGTCAGAGCAACATAGTTAATCTTCCTCCTCCTATTCAAACTGAGCCCGTCCAAAGAGGAAAGAATAATGGTAAATCAAAAGTTCCAAGAAATGGAAAATCCGCAGCTCAGAATTCAAATACAGCAGAAGCTATGAATTCAGCTGCAGTTAATAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCACCTTGATCCAAGATGCCAAGGATGGTACGCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGGATCAAGTTAATGCTCTACAGGCTGAAGTTAAAAGTTTATATGCCAAGGAATGCAAACTTGAGGAGTGTATAAGTGAAAGGAAGGAGCTTATAAGAAACCTGGAGGAAGGCAAAAACACTGGAAAGTACCTTTTTCTTACCAAGGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGGAACTTATTGCAATAAAGGCTCCAAAAGCCAGTTTCATTGAGGTCCCAGATCCCGATGAGGAATTAGACTTCCACCAAAGGCAGTACAGAATGATTGTTAGAAGTGCAACTGGACCGATAAATTTGTACCTCTTGAACAAGCATGACAGCAAGTTTGAGGGTGTGAGTGTAAAGCAGGCAAATTTAGAAGATCCATCGCGCAGTAGCAACCACTGCAGAATGGAGGGTGTGGGACTATTAGAAGGCCAAGGTTTACAGAAAAACCCTTCTGGGAGTTTAAGTTTTCTTGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACTCATTTGGATGTTGATGGTGACTATTGGTTTAAATCCGATCCCAAAGTTGGCCTAACAGAATTGTGGGGCACAAGTGCAGTTGGCTCAGATAGACAAACTTCTTAG 1176 0.4065 MSIPSENQIQHFPQFNFNLLHSPSPPNPSPFPVMHPCQSPRNEINNVNLNTGSNAEAFPSQSNIVNLPPPIQTEPVQRGKNNGKSKVPRNGKSAAQNSNTAEAMNSAAVNNCRYDSSLGLLTKKFVTLIQDAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELEDQVNALQAEVKSLYAKECKLEECISERKELIRNLEEGKNTGKYLFLTKEDILTLPCFQNKELIAIKAPKASFIEVPDPDEELDFHQRQYRMIVRSATGPINLYLLNKHDSKFEGVSVKQANLEDPSRSSNHCRMEGVGLLEGQGLQKNPSGSLSFLGSEAFGIQQITPTHLDVDGDYWFKSDPKVGLTELWGTSAVGSDRQTS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0235 391 Coils Coil 208 228 - -
Tpr7g0235 391 SMART E2F_TDP_2 113 178 IPR003316 GO:0005667|GO:0006355
Tpr7g0235 391 Gene3D - 108 180 IPR036388 -
Tpr7g0235 391 PANTHER TRANSCRIPTION FACTOR E2F 38 381 IPR015633 GO:0000978|GO:0006357
Tpr7g0235 391 SUPERFAMILY "Winged helix" DNA-binding domain 113 176 IPR036390 -
Tpr7g0235 391 CDD E2F_DD 189 296 IPR032198 GO:0046983
Tpr7g0235 391 Gene3D - 185 296 - -
Tpr7g0235 391 MobiDBLite consensus disorder prediction 72 101 - -
Tpr7g0235 391 Pfam E2F/DP family winged-helix DNA-binding domain 115 178 IPR003316 GO:0005667|GO:0006355
Tpr7g0235 391 SUPERFAMILY E2F-DP heterodimerization region 189 295 IPR037241 -
Tpr7g0235 391 PANTHER TRANSCRIPTION FACTOR E2FC 38 381 - -
Tpr7g0235 391 Pfam E2F transcription factor CC-MB domain 194 293 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0235 Tpr-Chr7 1937859 1942167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0235 80 379 E2F-DP Transcription Factor Family AT1G47870 50.667 8.69e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr7g0235 E2F_CC-MB 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0235 K06620 - gmx:100797301 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0235 7 1937859 1942167 Tpr7g0235 7 1937859 1942167 ECH