Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0203 ATGACTCAAGATCTTGAGATGAAAGATCGTTCTACTCCTTCCAACTCTATTTCTCCACCCGTTCCATCTACTCTGCAGCATTTGAAGGAGATAGCATCTCTTATCGAGACTGGTTCGTATTCGAAAGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTTACAATTGCATTGAGGAAGAAATTGACAGCTTCGGTTATTTCATCTTTTCTCGATCATGTTCTTACTCCTGGTTCTGAGCCTCATGCCAAATTATCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTCGATGCTGCAACATCTGCCATTCAAACCCCCACAACTAAACATTTGTTGCCTGAGATAGAAATTTTCTGTAACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCTAAAGCTTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAATGTGAACAGAAGAACAGTCGATGTTATAGCATCCAGACTGTTTTTTTACTATTCATACAGCCATGAACTTACTGGTGATCTTGCCGAAATTCGGGGCAACCTCCTTGCGTTGCACCGGATTGCTACCCTGCGCCATGATGAGTTGGGTCAGGAAACCCTTCTTAATTTGTTACTTCGCAACTATCTTCACTACAACCTATATGACCAGGCAGAGAAGTTGAGGTCAAAAGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTCGGGAAAATCCGGACAATTCAATTGGAGTATACAGATGCAAAGGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCAGTTGCAGCTCGAGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTACTGTTGGGAGAAATACCTGAACGGACTGTCTTTATGCAGAAAGGAATGGAGAAAGCACTGAGGCCTTACTTTGAGCTTACAAATGCTGTCCGCATTGGAGACTTGGAGCTGTTTAGGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGACGGAACTCATAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACCGGTTTGCGCAACATCAGCATCTCCTACTCTCGCATCTCACTAGCTGATGTTGCTAAAAAATTGAGGTTGGACTCACCAAATCCTGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGGTGGATGGTGTCCAAGGAAACTGGAGATATTTACTCCACTAACGAGCCTCAGCTGGCTTTTAATTCTAGGATTGCCTTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAACACACACAAAGAAAAAGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCCAAGCATATTGCAGAGGAGGATGATGATGATTTCTGA 1467 0.4335 MTQDLEMKDRSTPSNSISPPVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRKKLTASVISSFLDHVLTPGSEPHAKLSAYLPKEDDHEMEVDAATSAIQTPTTKHLLPEIEIFCNLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0203 488 Pfam PCI domain 312 417 IPR000717 -
Tpr7g0203 488 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 488 - -
Tpr7g0203 488 ProSiteProfiles PCI domain profile. 240 421 IPR000717 -
Tpr7g0203 488 Pfam Proteasome regulatory subunit C-terminal 421 487 IPR013586 GO:0000502|GO:0030234|GO:0042176
Tpr7g0203 488 MobiDBLite consensus disorder prediction 453 488 - -
Tpr7g0203 488 MobiDBLite consensus disorder prediction 453 481 - -
Tpr7g0203 488 SUPERFAMILY "Winged helix" DNA-binding domain 347 422 IPR036390 -
Tpr7g0203 488 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 488 - -
Tpr7g0203 488 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 346 439 - -
Tpr7g0203 488 Gene3D - 27 442 - -
Tpr7g0203 488 SMART PINT_4 346 439 IPR000717 -
Tpr7g0203 488 MobiDBLite consensus disorder prediction 1 22 - -
Tpr7g0203 488 Coils Coil 455 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0203 Tpr-Chr7 1699034 1703318 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0203 K03033 - gmx:100814379 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0203 7 1699034 1703318 Tpr7g0203 7 1699034 1703318 ECH
Tpr1g3904 1 43134046 43138845 Tpr7g0203 7 1699034 1703318 PCT