Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0202 ATGATGCTTGATTCAGTTCTTTTTGCACTTTTTCTTCCTTGTTTAGGAATGAGTGCGATTTTCGTCATTTATATGTGCCTTTTATGGTTCACCACTGCTCGTAACAACAACCGTTCGGATGGTACACCACCGATTAAGCCGGTCACTGATAAAGGTCTATCTCCTTTAGATCTTGAAAAGCTACCTAAAATCACAGGTAAAGAATTGGTTGCATCCACCGAATGCGCCGTTTGCCTCGACGAAATCGATAATGAACAACCGGCTCGTCTGATTCCCGGTTGTAATCATGCTTTTCATGTCCAATGTGCTGACACTTGGCTATCTAAACATCCTATTTGTCCTCTATGTAGAGCCAAACTCGACCCTCAGATTCTCAATTCTGAAAGTCCCTGCTAA 396 0.4242 MMLDSVLFALFLPCLGMSAIFVIYMCLLWFTTARNNNRSDGTPPIKPVTDKGLSPLDLEKLPKITGKELVASTECAVCLDEIDNEQPARLIPGCNHAFHVQCADTWLSKHPICPLCRAKLDPQILNSESPC* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0202 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 2 128 - -
Tpr7g0202 131 SUPERFAMILY RING/U-box 74 123 - -
Tpr7g0202 131 SMART ring_2 75 116 IPR001841 -
Tpr7g0202 131 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Tpr7g0202 131 Pfam Ring finger domain 74 117 IPR001841 -
Tpr7g0202 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 123 IPR013083 -
Tpr7g0202 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0202 Tpr-Chr7 1691280 1692301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0202 2 131 C3H Transcription Factor Family AT5G42200 55.147 3.86e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0202 K19037 - gmx:100811160 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0202 7 1691280 1692301 Tpr7g0202 7 1691280 1692301 ECH