Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0199 ATGTCAAGTAGTGGGGATACTCATTGGTGTTATAATTGCATGAGGTCAGTTCGACTGGGACGACAACATGCGGTTTGTTCTAGTTGTGACGGTGGATTTATTCAAGATCTCGATGATATGGTCCATGCTAGCTATGGAGCGGACAGCATTGAGGAACTAATTCCCGAACACAGTCCAAGGTTTGGTGCTCCTTTGTTAATCTATGGTGGCCAAATTCCACACAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAGAGGGACTCCAGGAACTGGTGTGGCGATAGGTAACTCGGTTAACTATTTTACTGGTCCTGGAGTAGAAGAACTGTTTGAACAGATTTCGGCTAATGACCGACCAGGCCCTCCACCTGCATCTCGGTCCTCTATAGACGCAATACCTATTGTGAAGATCGCGTCGAAGCATCTTCGATCAGATCCACATTGTCCAGTATGCCAAGATAAGTTTGAGCTTGGGTCTAATGCAAGACGAATGCCATGTAAGCACATGTTTCACTCAGATTGTATTATACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCGCAACATAGTGGAAGAAGGAGCAACCCTTTTTCCTTTTTGTGGCCTTTCGGCTCTTGA 642 0.4595 MSSSGDTHWCYNCMRSVRLGRQHAVCSSCDGGFIQDLDDMVHASYGADSIEELIPEHSPRFGAPLLIYGGQIPHRFSRQGGIDALFRGTPGTGVAIGNSVNYFTGPGVEELFEQISANDRPGPPPASRSSIDAIPIVKIASKHLRSDPHCPVCQDKFELGSNARRMPCKHMFHSDCIIPWLVQHNTCPVCRQELPQHSGRRSNPFSFLWPFGS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0199 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 42 - -
Tpr7g0199 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 199 - -
Tpr7g0199 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 197 IPR013083 -
Tpr7g0199 213 SUPERFAMILY RING/U-box 130 203 - -
Tpr7g0199 213 Pfam zinc-ribbon 7 36 IPR039525 GO:0061630
Tpr7g0199 213 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Tpr7g0199 213 CDD RING-H2_RNF126_like 150 191 - -
Tpr7g0199 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 42 - -
Tpr7g0199 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 44 199 - -
Tpr7g0199 213 SMART ring_2 150 190 IPR001841 -
Tpr7g0199 213 Pfam Ring finger domain 149 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0199 Tpr-Chr7 1673790 1676175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0199 97 195 C3H Transcription Factor Family AT5G01980 41.584 2.42e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0199 K11982 - mtr:MTR_1g051105 407.527