Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0179 ATGGCTTTCTCCACCACTTCCTTACTTTCCACAAACTTCTTAGGAGCAAGAAACATTCCAACTCCCAAAACAACCAAACCATCAATTTCACTTCCATTATTCTTCAAATCAACAATCTTAAATTCTCAAAAATCAAACAATGATAATTCAGAACCACTCAAATCCGCTGCTGTATCAGCTCTTATATTATCCTCTATGACTTTAAATATAACTCCGGTGGCTCTCGCCGCCGACAACATCACACCACCACCACCACCACCGGTACTCGAAGCACAACCAAATAAACTAAACCCTACAAATTCAACTTCACCTTTCTCTCAAAACATTTCACTCACAGCACCGAAACCACAAACTCAATCTATCACCGATCTTCCCGACGGTAGTCAGTGGCGTTACAGTGAGTTTTTGAATGCGGTAAAAAAAGGTAAAGTTGAACGAGTTAGGTTCAGTAAAGACGGTTCTGTCCTTCAACTAACCGCCGTTGATGGACGGAGAGCAAACGTTACCGTTCCTAACGACCCTGATTTAATTGACATTTTAGCAATGAACGGCGTTGATATTTCCGTTTCTGAAGGTGAACAAGGTAACGGTTTGTTCAATTTCGTTGGTAGTTTATTGTTACCGTTCCTTGCATTTGCGGGTTTGTTTTTGATCTTTCGTCGTGGCCAAGGAGGACCCGGTGGGCCTGGTGGGCTTGGAGGGCCCATGGATTTTGGTAGATCGAAATCGAAGTTCCAAGAGGTTCCGGAAACTGGTGTTACTTTTGCTGACGTGGCTGGTGCTGATCAAGCTAAGCTTGAATTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTACACTGCTTTAGGTGCTAAGATTCCTAAAGGGTGTCTTTTGGTTGGGCCACCGGGAACAGGAAAGACGCTATTGGCGAGGGCGGTAGCCGGTGAAGCTGGTGTGCCGTTCTTTTCGTGTGCGGCTTCGGAGTTTGTGGAATTGTTTGTTGGTGTTGGTGCTTCAAGGGTTAGAGATTTGTTTGAGAAGGCGAAGTCGAAGGCGCCTTGCATTGTGTTTATTGATGAAATTGATGCAGTTGGGAGACAGAGAGGAGCTGGACTTGGTGGTGGGAATGATGAGAGGGAACAAACTATTAATCAGCTTTTGACTGAGATGGATGGTTTTTCTGGTAATTCGGGTGTTATTGTTTTGGCTGCTACTAATAGACCTGATGTTCTTGATTCTGCATTGCTTAGACCTGGAAGGTTTGATAGGCAAGTTACTGTCGATAGGCCTGATGTTGCCGGTAGAGTTAGAATTCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGATAAAATTGCTAGGAGAACCCCAGGGTTCACAGGGGCTGATCTACAGAATCTGATGAATGAAGCAGCTATTCTTGCTGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATAGCGGATGCACTTGAAAGGATCATTGCTGGACCAGAAAAGAAAAATGCTGTTGTCTCAGAAGAGAAGAAGAAACTAGTAGCCTATCATGAGGCTGGCCATGCTTTAGTAGGTGCTTTGATGCCTGAATATGACCCTGTAGCCAAGATATCCATTATACCTCGTGGCCAAGCTGGTGGTCTCACCTTTTTTGCTCCCAGCGAAGAGAGGCTTGAATCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCTCTTGGAGGAAGGGTCGCCGAGGAGGTTATTTTTGGCCAGGAAAATGTCACCACTGGGGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCGAGGCAGATGGTTGAGAGATTTGGGTTTAGTAAAAAAATTGGACAAGTTGCCATCGGCGGGGGTGGTGGAAATCCATTCTTAGGACAACAGATGTCATCACAAAAAGATTATTCCATGGCAACTGCTGATATAGTGGATAAGGAAGTTAGGGAACTGGTAGATAAAGCATATATCAGGGCAACAACAATTATCAACACTCACATTGATATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACAGTTGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCAGAATTGTTTGTTCAATAA 2133 0.4365 MAFSTTSLLSTNFLGARNIPTPKTTKPSISLPLFFKSTILNSQKSNNDNSEPLKSAAVSALILSSMTLNITPVALAADNITPPPPPPVLEAQPNKLNPTNSTSPFSQNISLTAPKPQTQSITDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVTVPNDPDLIDILAMNGVDISVSEGEQGNGLFNFVGSLLLPFLAFAGLFLIFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYIRATTIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVQ* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0179 710 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 199 699 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr7g0179 710 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 11 710 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr7g0179 710 Pfam ATPase family associated with various cellular activities (AAA) 293 424 IPR003959 GO:0005524|GO:0016887
Tpr7g0179 710 ProSitePatterns AAA-protein family signature. 395 413 IPR003960 GO:0005524|GO:0016887
Tpr7g0179 710 SUPERFAMILY FtsH protease domain-like 506 700 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr7g0179 710 Pfam Peptidase family M41 506 699 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr7g0179 710 Gene3D Peptidase M41 502 705 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr7g0179 710 Gene3D - 426 501 - -
Tpr7g0179 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 496 IPR027417 -
Tpr7g0179 710 Gene3D - 243 425 IPR027417 -
Tpr7g0179 710 CDD AAA 259 424 - -
Tpr7g0179 710 Pfam AAA+ lid domain 447 488 IPR041569 -
Tpr7g0179 710 Gene3D - 124 196 - -
Tpr7g0179 710 SMART AAA_5 288 427 IPR003593 -
Tpr7g0179 710 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 53 702 - -
Tpr7g0179 710 PANTHER METALLOPROTEASE M41 FTSH 53 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0179 Tpr-Chr7 1472194 1476675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0179 249 701 Miscellaneous Gene Families AT5G53170 49.780 3.46e-135 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0179 K03798 - pvy:116112625 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0179 7 1472194 1476675 Tpr7g0179 7 1472194 1476675 ECH
Tpr1g3924 1 43363129 43366758 Tpr7g0179 7 1472194 1476675 PCT