Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0108 ATGGCAGAAGTTGAATACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACTGACAGTGTCGCTCTCGAGAAAGCCTTTTCAACGTTTGGCGAAATCGTCGAATCGAAGGTTATTACCGATCGTGAAACTGGAAGATCGAGAGGATTTGGATTTGTCACGTTCGCGTCTGAGCAATCGATGAAAGATGCGATTGAAGGGATGAACGGTCAGGATCTTGATGGACGTAACATCACTGTGAACGAGGCTCAAAACCGTGGAAGTGGAGGCGGTGGTGGAGGAGGTGGATACCGTGGTGGCGGTGGTGGAGGTTATAGTGGTGGTGGTGGAGGTTATAGTGGAGGAGGCGGTGGAGGTTACAACCGTGGTGGAGGAGGTGGAGGTTATGGTGGTCGTCGTGAAGGAGGAGGAGGTGGATATGGTGGAGGAGGAGGTGGATATGGTGGTGGAGGTGGAGGATATGGTGGTGGCCGTCGTGAAGGAGGAGGAGGTGGTGGTGGTTATGGAGATGGTGGTTCCAGATACTCAAGAGGTGGTGGTGGTGGTGGTTCTGATGGTGGAAACTGGAGGAGTTAG 573 0.534 MAEVEYRCFVGGLAWATDSVALEKAFSTFGEIVESKVITDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDLDGRNITVNEAQNRGSGGGGGGGGYRGGGGGGYSGGGGGYSGGGGGGYNRGGGGGGYGGRREGGGGGYGGGGGGYGGGGGGYGGGRREGGGGGGGYGDGGSRYSRGGGGGGSDGGNWRS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0108 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Tpr7g0108 190 SMART rrm1_1 7 80 IPR000504 GO:0003723
Tpr7g0108 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Tpr7g0108 190 PANTHER GEO13361P1-RELATED 2 136 - -
Tpr7g0108 190 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 136 - -
Tpr7g0108 190 Gene3D - 2 105 IPR012677 -
Tpr7g0108 190 MobiDBLite consensus disorder prediction 148 190 - -
Tpr7g0108 190 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0108 Tpr-Chr7 838402 839548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0108 8 79 Eukaryotic Initiation Factors Gene Family AT2G23350 47.222 4.81e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0108 - K13195 csin:114313582 150.599