Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0081 ATGTCTCCGGCCAAACGCGTCCACGAAGAAGGTGCTGACGAAAATGAAATCGTGAAGGTTGATGATGGCAAACGCTCGAAGGTCGAAAGTTGTTCAATCTTGGATTTTGAAGAGGATGACGATCCCAATGAACCGGAGCAAGACTTATCTCTCTTTCCCTCCTTCATCACGTCTGATGATTACACTGGCGGTGCATTTACTCTTTGTGATTTTTCTGACGAGGAGTCTGGTCATCATCATCATGATAATTTAGATTACGAGGATGATGGTTCACTAACACTTATTCCGGGTATGGTTGTACCTCCCTTTCTGTTTGATTTTACCAAGAATGAACTTGCTAACTCCGATGATAAAACTGTTCTGGCAACCTTCCTCTCGCGTGAAATAAGGGAGCACTCTCATTTGCATGATCTTTTCACGCCTATTGGTGCTGTGCACCGTGCCAAGCTTGCTATTGCTCCAACTGGCACTCCTGGGGGATATGGCTTTGTTACCTTTGTCACTAAGGAAGATGCTGAGAAGGCTATTAAAGAACTCAATGGCCATGTGCATGGCTGGGACGGACGCACCTTGAAAGTTGATTGGGCCGACCCCAAGAAAAGGCTAAGCCCCCCTTCAGATTCTTCAGATGATTCTTCAGATGAATCTTTCTGA 654 0.4557 MSPAKRVHEEGADENEIVKVDDGKRSKVESCSILDFEEDDDPNEPEQDLSLFPSFITSDDYTGGAFTLCDFSDEESGHHHHDNLDYEDDGSLTLIPGMVVPPFLFDFTKNELANSDDKTVLATFLSREIREHSHLHDLFTPIGAVHRAKLAIAPTGTPGGYGFVTFVTKEDAEKAIKELNGHVHGWDGRTLKVDWADPKKRLSPPSDSSDDSSDESF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0081 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 198 IPR000504 GO:0003723
Tpr7g0081 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 201 - -
Tpr7g0081 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 201 - -
Tpr7g0081 217 SMART rrm1_1 119 194 IPR000504 GO:0003723
Tpr7g0081 217 Gene3D - 107 216 IPR012677 -
Tpr7g0081 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 182 IPR000504 GO:0003723
Tpr7g0081 217 MobiDBLite consensus disorder prediction 1 23 - -
Tpr7g0081 217 SUPERFAMILY RNA-binding domain, RBD 106 208 IPR035979 GO:0003676
Tpr7g0081 217 MobiDBLite consensus disorder prediction 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0081 Tpr-Chr7 646809 648372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0081 116 204 Eukaryotic Initiation Factors Gene Family AT5G06000 44.444 3.22e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0081 K03248 - csin:114274143 72.7886