Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0072 ATGGAGTTTGCCGTTGCAAAAGCTTTGAAACCGAGTTTAAGGAGTGAGTTTGTTTTTCAACAAACGCTCGGTGGCGAGGAATTATTCAGTTACAACGCTAACACGGTGGTTGCTGGTGAAGATTTCTTCGTTGACGACCTCCTTGACTTTTCAAACGGCGACGACGTTATTCACCATGAAAACAACAACGACGATGAAGAAGAAGAAGAAGAGGAAGAGGAAAAAGATAACTCATCTCTTTCCTCTCACTCTCTCTCAGAAGATAACAACTCATCCAATTCCACCGACGCTTCCTATGATTCCATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGGTCTGGAATGGGTTTCTCACTTCGTAGATGATTCTCTACCGGAGCTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACATGTGTCCTCAAAATCAAACAAACAATGGAAAAACTCTTCGTTTTTCATCCGAGAAAATCAAAATTACCAAAAAGACCAGAACCATGAAAAACAGAAAACCAAACCCTCGCGTTTGGGCTCTTAGTCCGTTACTTTTACGTCCGTTTTTCCCGTCACCGCCGCCTTTGGTTTCCGGTGAGCCACCAGCGAAGAAACAGAAGAAAAAGGCCCAGGCCCAAGTTGGTGACGTTGAGGCCCAAGGTGAGGCCCATTTACAGCGAAGGTGCAGTCATTGCCAAGTTCAGAAAACGCCCCAGTGGAGAACCGGTCCGTTAGGAGCTAAAACCCTTTGTAACGCGTGTGGGGTTCGGTATAAGTCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGCAGTGAAATTCATTCAAATAGTCACCGGAAAGTGTTGGAGATGAGGAAGAGGAAAGGGATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTAGGACTTGTTGA 948 0.462 MEFAVAKALKPSLRSEFVFQQTLGGEELFSYNANTVVAGEDFFVDDLLDFSNGDDVIHHENNNDDEEEEEEEEEKDNSSLSSHSLSEDNNSSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNMCPQNQTNNGKTLRFSSEKIKITKKTRTMKNRKPNPRVWALSPLLLRPFFPSPPPLVSGEPPAKKQKKKAQAQVGDVEAQGEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPAQTQMVRTC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0072 315 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Tpr7g0072 315 MobiDBLite consensus disorder prediction 82 97 - -
Tpr7g0072 315 Coils Coil 56 83 - -
Tpr7g0072 315 CDD ZnF_GATA 230 287 IPR000679 GO:0006355|GO:0043565
Tpr7g0072 315 MobiDBLite consensus disorder prediction 61 75 - -
Tpr7g0072 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 287 - -
Tpr7g0072 315 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Tpr7g0072 315 PANTHER GATA TRANSCRIPTION FACTOR 1 315 - -
Tpr7g0072 315 Gene3D - 225 275 IPR013088 GO:0006355|GO:0008270
Tpr7g0072 315 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Tpr7g0072 315 PANTHER GATA TRANSCRIPTION FACTOR 1 315 - -
Tpr7g0072 315 MobiDBLite consensus disorder prediction 54 97 - -
Tpr7g0072 315 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Tpr7g0072 315 MobiDBLite consensus disorder prediction 197 221 - -
Tpr7g0072 315 PIRSF Txn_fac_GATA_plant 20 313 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0072 Tpr-Chr7 565404 567691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0072 41 296 C2C2-Gata Transcription Factor Family AT4G36240 42.308 1.79e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr7g0072 GATA 1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0072 - - gmx:100780311 313.538