Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0066 ATGGATGCCGAAGAAGACGAAGCTTCACGTAACCAATTTCCACCAACTCTCCAACAATCCGCCGATTCTCCTCCGCCGCCGGACCTCCCAATCAATGCCGACATCCACACCGCCGGAGAGTTTGAGGCCGTGATTACAGGTGAGACGAGTGATGCCACAGTAAACACGGAGGTTGTTGTTGATGACGTGGCACCGGCTGAGGGCGGTGAAATGCAGGCGATGGATGGTATTGAAGATGAAATTGTTGTGGAGGAGGAGAAGAAGGAGGAGGAGGATGAAGGAACTGACAACGTTGATTTGGAACCTGAGAATGTGGAAGAGGCAGAAGCCAATTTGATAATCGAAGAAGAGGAGGTTCAAATTAGGGATGATGAAAACACAGATGAAGCTCCTCTGGTGGGAGATGACGAAGACGAAAACAACGATGAAAAGGAAGAAGATGAGAAGGAAGAAGGAGATGAAATAGAAGAAGACGAGAAGGTAGAAGAAGGAGAAGAAAACGAAGAAGGCCAAAAGGAAGAAGTAGATGAAATAGAAGAAGACGGGAAGGAAGAAGAAGAAGAAGGAGAAGAAATAGAAGAAGATGGAGAACAAGAGCAAGAGCAGGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGCTGAAGTGGATGGTGATGGTGGTTTAACAGAAGATAAAGAGGCTGCTGAGGAGATGGAGGTGACGGAGGAGGAGCAGAGTGTGAGTGGTGGGAAAAGGAAGCGTGGGAATGGGAAGAATTCGAAGTCTACTGGAAGAGTTCCTTCGAAGAAAAAGACGGAAGAGGACGTATGTTTCATTTGCTTTGATGGTGGTGACCTTGTGCTCTGTGACCGCAGGGGTTGCCCCAAGGCTTACCACCCTTCCTGCATTAATCGTGACGAGGCCTTCTTCCAATCCAAAGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGAGTTGTATCAAAGATGCCGTTATGCTATGTGTTAGGGGAAACAAAGGCTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACAACATGGCACAAGTTGATTTTGATGACAAAAATAGCTGGGAGTATCTCTTCAAGGATTACTATGTAGATTTAAAAGGAAAGCTATCTCTAACATCTGATGAACTTGCTCAAGCTAAAAACCCTTGGAAGGGATCTGGTAAGCTTCCTTCCAAAGAGGAATCGCCGGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCTCTTATGAGAATGCAGATTTGAGTCGATCTAAAAAAAGAAAGCCCAAGAAACGGGCAAAGTCTCGTTCCAAAGAAAGGAAATCACATAGTGCAGCGACAGCGCATGGTGCTGATGGGCCATCTACAGATGAAAGCTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCATATGAGAAATGGAGATAAATCTATGTTGCCACAGTTTGATGTGCATGCTCTTCTGCTAGAATATATTAGAATAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATTGTTTGTGATGCGAGGCTTCAAAATTTGTTTGGTAAGCCAAGAGTTGGGCATTTCGAAATGTTAAAACTTCTTGAATCCCATTTCCTTATAAAAGAGGATTCACAGGCTGAAGATCTCCAGGGGAGTGTTGTTGATACGGAAGTTAGTAATTTGGAGGGTGATGGCAATGATGATACATATACTAAAGCTGGGAAAGATAAGAAACGTAAAAGTCGTAGAAAGGGTGATGGGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTAGTGGAAGAACTACTTGAAGATACAGATAAGTTTCATGATAATGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGTTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCGATGGATATCATCTCAAATCAGGAGTTCTCAGAGGATGAATGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGAATGACTGTGGGTGACATTCAGGACAAAGCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAGCAGAGATGGTACGGCTAAATCACCTTCGTGATAGAGCCAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAGTACTCCTGAAGAACGGCAACGTAGATTGGCGGAAATTCCAGAAATACATGTGGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCGACTGCATTTGGAAGGAAGGGGAGAGAAACTGCTTCGCCGAGAAGCGGTTCCATATCAAGTGATTCTTGGAGTGGAACAAGGAATTATTCTCATGTGAATCAGGAACTCAGCAGAAATTTATCTAATAAGGGATTTTCAGTCAAAGGCGATGGTGTTTCTAATGCTAGTGAGGTTTTTAATGATGCTAAATTGCACCAGGGAAGAGATAGGGAATCGCAACTATCTAATAGTTGGGAGAGGCAAAAGCTACCGTCTTCAAGCTTGGATGGTGGTGCTAAAAATATCAAGCCATTGGTAAAATCTGAGTCTTATTCTACTACTGTCTCAGAAGCTGCCACAGCACCATCTTCTGCCGGAATAGTTGCCCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAAGGACCATTTTCCATAACACAACTTCGCAAATGGAATAATACCGGATACTTCCCTGCTGATTTGAAGATTTGGAAAACCACCGAGAGACAAGATGAATCTATACTCTTAACAGATGTCTTAGCAGGAAAGTTTTCAAAGGAACCATCCATGGTAGATAAAACTCCTCCTAAGACTCAAAATCATTCATCCTCATTCTCTAGGATGTCTCCTTTGGCAGCTCAAGGTTTAGCAAGTAAAACACCTCCATTGGCAGTTGAGGTCCCTAAGAATCCTGGAAATGGTTGGGGTTCTGATGCTGGTGTCAGAAATGAATCGACAAATCTTCCTTCGCCTACTCCCCAAACTTCTTCAGGTGGGTCTAAGGTTCATGACTTTGAAAATTGGTCACCAACACCTGTCCAAATGGCTGGGTCTGTCATGGGAAATTCATTCACAAACGGTCTTGGAAGTTTGCAGACCTCCGTGGCAGTAAACTCACAACCTGGTATGACTACAAATACCACTCAAGTACATCTTCATGCAACAGAAATGGCACAGGCTCTGGCTGCAGGTGTTGACATTAAAACAACAGCTGCAACTATGCAAAACCAGGCTGGGAGTAGCCATAATTCTCATGCTGAAATACAAGGGTGGGGGCAGTCTGTGGTTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACTCCATCTCAAAGGGTAGAACCAACTAATTCTACTACCATACCTGCTCAGCAAGCTTCCCATGGTATATGGGGTGATGCTTCATCTGTTCAGAACTCTGTGTCACTTAACAATGGAAATCCAACTGGGAGTTTACCCACACATGGTTTTCCAGGCATGACTGCACCCGAGCCTTGGAGACCACAAGTTTCACTTAATCAAGCAAACACCATGGCCCCACCACCACCCAACATACCCTGGGGCGGAAACATGCCAGGAAATCAGAATATTAGCTGGAGTGGGGCAATACCTGCCAATATGAATGTCAATTGGATGCCTGGACAAGTGCCAGCACCGGGAAATACAACTCCAGGATGGGCAGCTCCTACCCAGGGGCTACCTCCAGTAAATGCAAATGCAGGTAGCTGGGGAGCACCTGGTCAAGGTCATCAGCAGGTAAATGCAAATGCAGGTTGGGTAGTGCCTGGTCAAGGGCCAGCACCTGGAAGTGCCAATCCTGCTTGGGCTGCATCAGCTGGAAACCCAGGCATGTGGAGAAACGAGCAAAGTCATAACGGAGACAGATTTCCCAACCAAGGTGAACGTGGTATGCGCGGTGGAGATTCTGGTCGTGGAGGTAAATCTTGGAACAGGCAGTCATCATTTAGAAGCGGAGGCAGAGGGGGTTCTTCTAGACCTCCCGGTGGGGGAAGAGGAATCTGCAGGTATCATGAGAGTGGAAATTGCAGGAAGGGTGCTTCATGTGATTATCAACACAATTAA 4404 0.4416 MDAEEDEASRNQFPPTLQQSADSPPPPDLPINADIHTAGEFEAVITGETSDATVNTEVVVDDVAPAEGGEMQAMDGIEDEIVVEEEKKEEEDEGTDNVDLEPENVEEAEANLIIEEEEVQIRDDENTDEAPLVGDDEDENNDEKEEDEKEEGDEIEEDEKVEEGEENEEGQKEEVDEIEEDGKEEEEEGEEIEEDGEQEQEQEEEEEEEEEEAEVDGDGGLTEDKEAAEEMEVTEEEQSVSGGKRKRGNGKNSKSTGRVPSKKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFQSKGKWNCGWHLCSNCEKNAYYLCYTCTFSLCKSCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEEGNNMAQVDFDDKNSWEYLFKDYYVDLKGKLSLTSDELAQAKNPWKGSGKLPSKEESPDELFDATNDRGSDSDSSYENADLSRSKKRKPKKRAKSRSKERKSHSAATAHGADGPSTDESSEWASKELLEFVMHMRNGDKSMLPQFDVHALLLEYIRINKLRDPRRKSQIVCDARLQNLFGKPRVGHFEMLKLLESHFLIKEDSQAEDLQGSVVDTEVSNLEGDGNDDTYTKAGKDKKRKSRRKGDGRGLQSNVDDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDNVVGSFVRIRISGSGQKQDLYRLVQVVGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFSEDECKRLRQSIKCGLINRMTVGDIQDKALTLQAVRVKDWLEAEMVRLNHLRDRASEKGRRKELRECVEKLQLLSTPEERQRRLAEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTAFGRKGRETASPRSGSISSDSWSGTRNYSHVNQELSRNLSNKGFSVKGDGVSNASEVFNDAKLHQGRDRESQLSNSWERQKLPSSSLDGGAKNIKPLVKSESYSTTVSEAATAPSSAGIVAPAVKINETEKMWHYQDPSGKVQGPFSITQLRKWNNTGYFPADLKIWKTTERQDESILLTDVLAGKFSKEPSMVDKTPPKTQNHSSSFSRMSPLAAQGLASKTPPLAVEVPKNPGNGWGSDAGVRNESTNLPSPTPQTSSGGSKVHDFENWSPTPVQMAGSVMGNSFTNGLGSLQTSVAVNSQPGMTTNTTQVHLHATEMAQALAAGVDIKTTAATMQNQAGSSHNSHAEIQGWGQSVVPKPESQAWGGTPSQRVEPTNSTTIPAQQASHGIWGDASSVQNSVSLNNGNPTGSLPTHGFPGMTAPEPWRPQVSLNQANTMAPPPPNIPWGGNMPGNQNISWSGAIPANMNVNWMPGQVPAPGNTTPGWAAPTQGLPPVNANAGSWGAPGQGHQQVNANAGWVVPGQGPAPGSANPAWAASAGNPGMWRNEQSHNGDRFPNQGERGMRGGDSGRGGKSWNRQSSFRSGGRGGSSRPPGGGRGICRYHESGNCRKGASCDYQHN* 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0066 1467 ProSiteProfiles SWIB/MDM2 domain profile. 484 567 IPR003121 -
Tpr7g0066 1467 SMART swib_2 499 570 IPR019835 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 420 435 - -
Tpr7g0066 1467 SMART rtf1 626 736 IPR004343 GO:0003677
Tpr7g0066 1467 Pfam Plus-3 domain 631 734 IPR004343 GO:0003677
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 904 935 - -
Tpr7g0066 1467 ProSiteProfiles Zinc finger PHD-type profile. 267 333 IPR019787 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1035 1054 - -
Tpr7g0066 1467 ProSiteProfiles Plus3 domain profile. 626 759 IPR004343 GO:0003677
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 84 219 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1 33 - -
Tpr7g0066 1467 CDD PHD5_NSD 269 314 - -
Tpr7g0066 1467 SMART gyf_5 976 1031 IPR003169 GO:0005515
Tpr7g0066 1467 SUPERFAMILY FYVE/PHD zinc finger 265 319 IPR011011 -
Tpr7g0066 1467 Coils Coil 161 216 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 806 839 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 856 871 - -
Tpr7g0066 1467 SMART PHD_3 269 315 IPR001965 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 453 467 - -
Tpr7g0066 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 361 IPR013083 -
Tpr7g0066 1467 Gene3D - 628 756 IPR036128 GO:0003677
Tpr7g0066 1467 Gene3D - 976 1035 IPR035445 -
Tpr7g0066 1467 ProSiteProfiles Zinc finger C3H1-type profile. 1442 1467 IPR000571 GO:0046872
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 84 260 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1400 1446 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1420 1434 - -
Tpr7g0066 1467 ProSiteProfiles GYF domain profile. 975 1029 IPR003169 GO:0005515
Tpr7g0066 1467 Pfam GYF domain 978 1019 IPR003169 GO:0005515
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1211 1233 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1205 1233 - -
Tpr7g0066 1467 SUPERFAMILY GYF domain 971 1028 IPR035445 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 1040 1054 - -
Tpr7g0066 1467 CDD GYF 975 1030 IPR003169 GO:0005515
Tpr7g0066 1467 SUPERFAMILY SWIB/MDM2 domain 489 566 IPR036885 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 585 616 - -
Tpr7g0066 1467 Gene3D SWIB/MDM2 domain 479 575 IPR036885 -
Tpr7g0066 1467 Pfam SWIB/MDM2 domain 492 565 IPR003121 -
Tpr7g0066 1467 ProSitePatterns Zinc finger PHD-type signature. 270 330 IPR019786 -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 806 871 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 410 487 - -
Tpr7g0066 1467 MobiDBLite consensus disorder prediction 906 920 - -
Tpr7g0066 1467 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 70 1467 - -
Tpr7g0066 1467 SUPERFAMILY Plus3-like 627 755 IPR036128 GO:0003677
Tpr7g0066 1467 PANTHER UNCHARACTERIZED 70 1467 - -
Tpr7g0066 1467 CDD SWIB-MDM2_like 490 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0066 Tpr-Chr7 513025 527241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0066 267 354 PHD Transcription Factor Family AT5G36670 36.000 3.86e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Tpr7g0066 Plus-3 9.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0066 - - mtr:MTR_3g117490 2017.28