Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0040 ATGGGAAGGTCCCCTTGCTGCGAGAAAGGTCATACAAACAAAGGAGCATGGAGCAAAGAAGAAGATGAGCGACTCATAGCTTATATTACAGCACACGGTGAAGGATGTTGGCGATCTCTCCCCAAAGCAGCCGGTCTTCTCCGTTGCGGTAAGAGTTGCCGTCTCCGGTGGATCAACTATCTTCGCCCTGACCTCAAACGTGGCAATTTTACCCAACAAGAAGATCAACTCATCATCAAACTCCACACTCTCCTCGGTAACAAGTGGTCTCTAATAGCGGGAAGAACAGACAATGAGATAAAGAATTATTGGAACACACATTTAAGAAAGAAACTTCTGAGTAGAGGAATTGATCCTGCAACTCACATGCCTCTCAACCAAACTTCCCAACAAGAGGAACGCTGCCCTGATTTGAATCTTGAGCTAACCATTAGTCCTCCACATGATCACCCTCACCAGCTGCAGCAGCCATTCAGTAGTGGCACCAGCAGCACCGTTACATCTTTATTATGA 513 0.4659 MGRSPCCEKGHTNKGAWSKEEDERLIAYITAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQQEDQLIIKLHTLLGNKWSLIAGRTDNEIKNYWNTHLRKKLLSRGIDPATHMPLNQTSQQEERCPDLNLELTISPPHDHPHQLQQPFSSGTSSTVTSLL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0040 170 Gene3D - 14 66 - -
Tpr7g0040 170 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr7g0040 170 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Tpr7g0040 170 CDD SANT 16 61 IPR001005 -
Tpr7g0040 170 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Tpr7g0040 170 CDD SANT 69 108 IPR001005 -
Tpr7g0040 170 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Tpr7g0040 170 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 127 - -
Tpr7g0040 170 ProSiteProfiles Myb-like domain profile. 62 108 IPR001005 -
Tpr7g0040 170 Gene3D - 69 138 - -
Tpr7g0040 170 SMART sant 66 110 IPR001005 -
Tpr7g0040 170 SMART sant 13 63 IPR001005 -
Tpr7g0040 170 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr7g0040 170 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 127 - -
Tpr7g0040 170 MobiDBLite consensus disorder prediction 143 170 - -
Tpr7g0040 170 MobiDBLite consensus disorder prediction 149 170 - -
Tpr7g0040 170 SUPERFAMILY Homeodomain-like 13 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0040 Tpr-Chr7 329827 330769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0040 1 153 MYB Transcription Factor Family AT4G38620 69.277 1.04e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr7g0040 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0040 K09422 - gmx:778031 276.559