Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0022 ATGGTGTTGGTGGGTGTTTGCGGAAAAGCGGTGCTGTTTAGTATTGGAGTCAGAGTGAGACCCAAAACCACCACACACTCTCTCTTTATCGTTTCCAATTCCACCACCTCCGCCGATAGCCAAGACACCACAACCACCACGAGTTTCGGAAGACTAAAAGTCCAGAAAGTGAAGGCTCTCATCCACAGAACCAAGCAAAACACAAGACGCGAACGAGTATTAGTAGAAGAAGAAGATGACCGCAGTACTTCTCAAAGACAACGACGTTCTCCTCCTCCTCCTCCTGGTTGGGGAGATAATAAAGTTACTCAGACTCAATCATTGCCAGAGGCTGATACCAACTTTTTCAGTCTCAAGTCATTTAAAGACATTGGATGCGCTGATTTCATGATTCAATCTCTCCATAAACTCTCTTTAACACGCCCTTCCAATATACAGGCCATGTCTTTTCCTCCCATCATTGCCCGAAAATCTTGTATCATAGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTCTACCTATCATTCAACATCTCAGACAACAAGAACTACTACTACAATCACCTCATCATAATTCACAATCTCCTACTGTTCTTATACTAGCTCCCACATCAGAATTAGCTTCTCAGGTCTTAGATAATTGTCGATCCTTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACCGGAGGCTATCGACAAAAAGCTCAACTCGATAGTTTAAAGCAGGGCGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTTTTCCTCATAAAGGAAGGCTTCTTGCACTTAACAAATCTAACATGTGCTGTGTTGGATGAGGTAGACATACTTTTTGGGGATGAGGACTTCGAAAAGGCTCTGCAATACTTGATTAGTTCTTCCCCGGTTGACACACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCAGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGTCTTGAAGAGATAATAGTAGATTGCAGTGGGGAAGATGGACAAGAAAAAACTCTTGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCGGAGAAGAATCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAGGGAATTCGCATACAAGTTCTACCTTTCCATGCCGCCATGACACAAGAATCACGGCTTGCTAGTATGAAAGAGTTTACACGTTCTCCATCAAAAGAAGTGTCCCAATTTATGGTATGCACTGACAGAGCATCGCGGGGAATTGACTTCACTAGAGTGGACCATGTAATACTTTTTGACTACCCACGTGATCCAAGCGAATATGTACGTCGTGTCGGAAGAACCGCAAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCAAGCAAAGTAATGGAAAGAAATCGGAAGGGTCATCCACTGCATGACGTACCTTCGGCTTATGAGTATTGA 1578 0.4252 MVLVGVCGKAVLFSIGVRVRPKTTTHSLFIVSNSTTSADSQDTTTTTSFGRLKVQKVKALIHRTKQNTRRERVLVEEEDDRSTSQRQRRSPPPPPGWGDNKVTQTQSLPEADTNFFSLKSFKDIGCADFMIQSLHKLSLTRPSNIQAMSFPPIIARKSCIIADQSGSGKTLAYLLPIIQHLRQQELLLQSPHHNSQSPTVLILAPTSELASQVLDNCRSLSKSGVPFKSMVVTGGYRQKAQLDSLKQGVDVLIATPGRFLFLIKEGFLHLTNLTCAVLDEVDILFGDEDFEKALQYLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIVDCSGEDGQEKTLDTAFLNKKAALLKLAEKNRVPRTIVFCNKIETCRKVENALKRFDRKGIRIQVLPFHAAMTQESRLASMKEFTRSPSKEVSQFMVCTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLASKVMERNRKGHPLHDVPSAYEY* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0022 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 496 IPR027417 -
Tpr7g0022 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 332 IPR014001 -
Tpr7g0022 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 525 IPR001650 -
Tpr7g0022 525 SMART ultradead3 138 347 IPR014001 -
Tpr7g0022 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 524 - -
Tpr7g0022 525 CDD SF2_C_DEAD 344 495 - -
Tpr7g0022 525 Pfam DEAD/DEAH box helicase 144 318 IPR011545 GO:0003676|GO:0005524
Tpr7g0022 525 CDD DEADc 130 318 - -
Tpr7g0022 525 MobiDBLite consensus disorder prediction 65 100 - -
Tpr7g0022 525 MobiDBLite consensus disorder prediction 65 86 - -
Tpr7g0022 525 Gene3D - 59 332 IPR027417 -
Tpr7g0022 525 Gene3D - 338 518 IPR027417 -
Tpr7g0022 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 524 - -
Tpr7g0022 525 SMART helicmild6 395 485 IPR001650 -
Tpr7g0022 525 Pfam Helicase conserved C-terminal domain 368 484 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0022 Tpr-Chr7 208362 211707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0022 118 495 Eukaryotic Initiation Factors Gene Family AT3G19760 27.487 3.24e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0022 K13179 - gmx:100780849 687.952