Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0020 ATGAAGGTACCTAGCCCGACGCAGAAGCAATCTGTTGGGGATCGTCACATGATCTCACCCACTCGCCACAATATGTCTCGATCATCTAGGAGGAGGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGAGGTTGACTCATATGCCACGACTCATCAGACTCAGCTCTCTTCCGATAGTCCTTACTACAAGGGTCTCACCGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGAAGAAGACGACGACGACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAACAACAACAGTATCTCTTCACCACTAAGACCTATCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCCAGTCATCATTCACATCCTCATCTCCACCCCCATCACAACTCACCCCTTTCTTGTTACCACGACTCAAGTCCATATTATAGGGGTCTTATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTCTCCCTCAACATCAATTTCAAAACTGCCACTGACGCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGCCACTGATGGTAACAGAGCCAGAAACAACTTTAGATGATGAGATGGAGTTGATCCATCCTGATATCCAAGGGAAGCCTTTGAGGGTAAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGCTGATAGATGATGTTGAAGAGGGGAAGCCTTTGAGGGTTAATTATGAATCAGAAACAGTTCCAGAGAAAACAATTTTAGAAGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGGAAGTCTTTGAGTGAGAGAGTAGCATCAGATTCTGAGACAGTATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGGTTTGGAGGAGGAGATGGAATTGGTGATTAAACAAGAGAAGCCATTGAGAGAGAGTTGTGTATCACAAGATGGGAATGAGAACGTACTAATAAATATAGATTTGAAAGAGGAACTCAAAGGCTTTTGGTTGGGTGGTCAAAAGACTGTTTATGAACAAACAGTGTCACTGGAATTACCTTGTGAGCACAAGTTGATGGACACAACTGTGGAAGGAAATCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGACCTTGGCTGAATTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAAGGTGGGTGTGGCTGTAATCATTTTATATTTGAAGGACCTCCAAATGTAGGAAAAAGATCCATGATACGAGCTATGCTTCGAGAGGTATTTGGCGCTGACGGAGTGCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTTGAAAATCTGCAACTGCGCCTAAAGAAATCGCTCCATCATGTTGAGGTGAATCTGTCAGAGGCAAAGGGATATGAAAAACATGTGATTTCTGAGTTATTCAAGGAAACATATGGTAAAGTGATCAATAGCAAATTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTACGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATAAAGTGGATGGTGGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGACGAATCAAGGCTACAACCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTTTGAAGATTTTGGAACGGATTGTAGAAGAAGAAGGAATAAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGGCACAAGAATGCCCTCAACGAGGATGAGTTCATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGTTGTATGCTATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGACGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACGACTTAACTAGTCTAGTTGATCACTCACTATGCTCAGGGGTTACCAAACTTCACAAGGAGTACACCAAAGGTAGTGAAATCAAATTTGAAAGTGTGAAACATTATGCTCAAAACAAACAAGGAGGATCAGATGAAAGGAGCAACGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCGTGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCGAGGAACATAG 2355 0.4115 MKVPSPTQKQSVGDRHMISPTRHNMSRSSRRRKNSGHWWLSSISWMKKEVDSYATTHQTQLSSDSPYYKGLTDQSLAITHEDYEEEDDDDNNNNNNSSSSNNNNNNNSISSPLRPILLSSSPHSSPYYKGLTDYSLVVDASWASHHSHPHLHPHHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTATDAAQPSTHDFVVFLSPEDQPLMVTEPETTLDDEMELIHPDIQGKPLRVKDKLSSQATLEELIDDVEEGKPLRVNYESETVPEKTILEDVVLLVEEHKRKSLSERVASDSETVLLQQINADKTDLGLEEEMELVIKQEKPLRESCVSQDGNENVLINIDLKEELKGFWLGGQKTVYEQTVSLELPCEHKLMDTTVEGNLYEYLWATKYQPKTLAEFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRLKKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSKLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQILKILERIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDDLTSLVDHSLCSGVTKLHKEYTKGSEIKFESVKHYAQNKQGGSDERSNELTKKNAMNYLKVEEFIAKFMSWYKNSCKSDDHVQLIAGRGT* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0020 784 MobiDBLite consensus disorder prediction 93 107 - -
Tpr7g0020 784 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 275 771 - -
Tpr7g0020 784 Gene3D - 396 585 IPR027417 -
Tpr7g0020 784 Gene3D - 647 766 - -
Tpr7g0020 784 MobiDBLite consensus disorder prediction 1 33 - -
Tpr7g0020 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 639 IPR027417 -
Tpr7g0020 784 Gene3D - 586 646 - -
Tpr7g0020 784 Coils Coil 618 638 - -
Tpr7g0020 784 MobiDBLite consensus disorder prediction 83 107 - -
Tpr7g0020 784 SUPERFAMILY post-AAA+ oligomerization domain-like 647 711 IPR008921 GO:0003677|GO:0006260
Tpr7g0020 784 PANTHER OS10G0574500 PROTEIN 275 771 - -
Tpr7g0020 784 CDD HLD_clamp_RFC 585 641 - -
Tpr7g0020 784 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0020 Tpr-Chr7 188240 193379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0020 397 768 Core DNA Replication Machinery Family AT5G27740 31.117 2.42e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0020 K10756 - gmx:102664389 622.083