Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g4042 ATGTCTTATAGCTATTTTCCCATTAGTTACCAAAGAAAGATGGAGTACAACCCTAATAAATCTGACCAAATAAGATGGAACTCAGATGATATAGGTGGTCCTGGACAAGTTAGGTCTTATTCTTGTACCTTTTGCAAGAGAGGATTTTCAAATGCACAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAATCTTCCGAAGAAAATTCGCTTTCTTTGGACATCTCAAACAAGAACACGAATGGTCCTGATCATATTGATTTGGAACAGAATCATGAAACTCAAAGGGGAAAGTTTACAAAAGAATTTCCTCGTAGTTCTTCATATGTTGATATAAAGGGAGGTGGTGTTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATATAGACCTTGAGCTTAGGTTAGGTTATGATCCAATAGATTCATCAACATTGAGCACTCGATCGTTCTTTTGA 477 0.3711 MSYSYFPISYQRKMEYNPNKSDQIRWNSDDIGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENSLSLDISNKNTNGPDHIDLEQNHETQRGKFTKEFPRSSSYVDIKGGGVMAQRIEEKKCDIDLELRLGYDPIDSSTLSTRSFF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g4042 158 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Tpr6g4042 158 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 18 153 - -
Tpr6g4042 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Tpr6g4042 158 MobiDBLite consensus disorder prediction 73 87 - -
Tpr6g4042 158 Coils Coil 158 158 - -
Tpr6g4042 158 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Tpr6g4042 158 Gene3D Classic Zinc Finger 33 110 - -
Tpr6g4042 158 MobiDBLite consensus disorder prediction 65 87 - -
Tpr6g4042 158 PANTHER OS07G0101800 PROTEIN 18 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g4042 Tpr-Chr6 45636380 45637035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g4042 36 151 C2H2 Transcription Factor Family AT3G53820 40.164 3.70e-21 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g4042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g4042 - - lja:Lj1g3v3443990.1 185.267