Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g4012 ATGATGTTGAATTCTAGTGGAGAAGATGAATTGTATGAACAATTATGGAAGGCTTGTGCAGGTCCTCATGTTGAAGTTCCTCGTACAGGACAAATGGTTTACTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAAGAACTAAATCAAAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATAACTCTGGTTCCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACCTCCAAGACCGAAAATTCACTCCTTCTCCAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTAAGGAAGCATGCCACAGAATGTCTTCCTCCATTGGATTTGTCCCAATCTACTCCAACACAGGAATTGGTTGCTAGGGACCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTCGCTGGAGATACATTTGTGTTTCTGAGAGGGGAAAACGGAGAATTACGCGTTGGAGTGAGGCATCTTGCTTCTCCACAGAGTTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACACAAACTCTTTTTGTGGTATACTATAAGCCCAGGATGAGCCAGTTCATTATAAGTGTGAATAAGTATATGGAAGCTATCAACCAAAAATATAGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATTCCTCTGAGACTGACAAAAGATTTTCTGGCACAATAGTTGGACAAGAGGATATTTCTTCGCACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGACGCTGCATCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTCTGGCTTCGGTTCCTATATCTCCTCCACCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCCGATCTTGGTGACACAGCACCAGGTGACTCTACTTACTGGGAAGCTGGGTTGACACAATCAGACGTAACACAAGTTAATATTATGTCGGAAATCCAAAGGAGTGAAAGTATGCATATGTGGCATCATAAGCTAACTGATAATAGCAGCTGCAATGGTAAATCAAGGAATCCAACAGACGGAAGTTGGCTATCTTCTCCTCATTCTAGTGGTCCTTCTCATTTGTGTCAGGACACAACCGACGATAGCAAGAGTGTCAATGTCTCAGCTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATCATTTGATTGACAAAGTTGACAAGGAGAACAAAGTAGAGCCTGCTACAAGCTGTAGATTGTTTGGGGTTTATCTTAATGATAGCAGCAGGAACTCTCAGAAGGCATCTGAATATGCAGAAAATGTATTTGGAGTCCCTTCTCAGGGATGTGTTGCCGCTCCCTTGTCAAGAACTGATACAGACCAAAATAACTTTGATATCTCAAAGTCTTCAAAAGAAAGGAAACAAGAACCGTTACAAATATCTCCAAATGAAACACAAAGCAAGCAAATCAATAGCAGAAGTTGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCGTTGCATGGATACGGTGAACTTATTGATGAATTGGAGAAGCTGTTTGACATAAAGGGACACATCAAACCTAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAAAAGAATCTTCATTTGTTCTAGCCAAGATGTACACAAAATGAGCACAGGAACCAAATTACCTATCTCATCAATAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 2040 0.4137 MMLNSSGEDELYEQLWKACAGPHVEVPRTGQMVYYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPRPKIHSFSKVLTNSDTSTHGGFSVLRKHATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIISVNKYMEAINQKYSVGMRFKMSFDGDDSSETDKRFSGTIVGQEDISSHWLNSKWRSLKVQWDDAASIPRPDRISPWEIEPLLASVPISPPPAAVKYKRPRLPSEVPDLGDTAPGDSTYWEAGLTQSDVTQVNIMSEIQRSESMHMWHHKLTDNSSCNGKSRNPTDGSWLSSPHSSGPSHLCQDTTDDSKSVNVSAWPISKTHSEILNNNDHLIDKVDKENKVEPATSCRLFGVYLNDSSRNSQKASEYAENVFGVPSQGCVAAPLSRTDTDQNNFDISKSSKERKQEPLQISPNETQSKQINSRSCTKVQMQGVAVGRAVDLTALHGYGELIDELEKLFDIKGHIKPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKMSTGTKLPISSIEETVISSDTAET* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g4012 679 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Tpr6g4012 679 Gene3D - 565 657 - -
Tpr6g4012 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr6g4012 679 MobiDBLite consensus disorder prediction 417 452 - -
Tpr6g4012 679 Gene3D - 113 217 IPR015300 -
Tpr6g4012 679 SUPERFAMILY DNA-binding pseudobarrel domain 104 245 IPR015300 -
Tpr6g4012 679 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
Tpr6g4012 679 SMART B3_2 116 218 IPR003340 GO:0003677
Tpr6g4012 679 SUPERFAMILY CAD & PB1 domains 566 645 - -
Tpr6g4012 679 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr6g4012 679 PANTHER AUXIN RESPONSE FACTOR 1 669 - -
Tpr6g4012 679 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Tpr6g4012 679 Gene3D - 277 350 - -
Tpr6g4012 679 Pfam AUX/IAA family 616 654 IPR033389 -
Tpr6g4012 679 Pfam AUX/IAA family 544 605 IPR033389 -
Tpr6g4012 679 CDD B3_DNA 114 215 IPR003340 GO:0003677
Tpr6g4012 679 MobiDBLite consensus disorder prediction 555 569 - -
Tpr6g4012 679 MobiDBLite consensus disorder prediction 543 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g4012 Tpr-Chr6 45331361 45336859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g4012 2 662 B3 DNA Binding Superfamily AT4G23980 56.909 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr6g4012 AUX_IAA 4.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g4012 K14486 - gmx:100803911 972.615