Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g4009 ATGAGATGCACCATTTTCACAAACCCATTTCTCAAAATTCTCAGTTTCATCATTCTACAAACTCTACCACTCATAACACAAACAAAAATGCTAACTTTACCACTCAAATCACAAGTTATTCCATCTGGGTATCTTCCAAGACCACCAAACAAGCTTCGTTTTCATCACAATGTTAGTCTTACAGTTTCAATTACTGTTGGCACCCCCCCACAAAACGTGTCATTAGTAATTGACACAGGAAGTGAACTTTCATGGCTTCATTGTAACAATACAACAAACCGGGTTTCACCTGACCCGTTTTTTAACCCGAATTTTTCTTCTTCCTATAAGCCAGTTCCTTGTTCTTCAACTACTTGCACGACCCGAACCCGAGATTTTCCCATACCCGCTTCATGTGACTCAAATAATCTCTGCCATGCTACTCTATCATATGCAGATTTTTCTTCCTCTGAAGGGAACCTTGCTTTTGATACATTTGGGTTTGGAGGATCCGATAACCCGGGTATTGTATTCGGGTGTATGGAATCGAGCATTAGCACAAACTCCGATGGAGATGCCAATGCAACCGGGTTAATGGGTATGAATCTCGGGTCACTTTCATTTGTTTCTCAGCTCAAGATACCCAAATTCTCGTATTGTATATCGGGTTCGGATTTCTCAGGTATTTTACTTCTCGGAGGATCCAATTTCTCGTGGACTGGGTCGTTGAATTATACTCCTTTAGTTCAAATATCCACTCCTTTACCTTATTTTGATCGGGCTGCGTATACGATCCGACTCATGGAAATTAGGGTTTCGAATAAATCACTTAATTTGTCAGAAAGTGTGCTCGTTCCAGATCATACTGGAGCGGGCCAAACTATGTTTGATTTGGGTACTCAATTTACATTTTTACTTGGGCCTGTTTATAGTGCATTGAAAGAAGAGTTTCTTAATCAAACAAATAGTACATTACGAGTGTTGGACGATCCAAATTTTGCATTTGAAGTAGGAATGGATCTTTGTTTTCGGGTTCCATTGAACCAATCAAAATTACCCGAGATTCCGAGTGTTAGTTTGGTTTTCGATGGAGCTGAGATGAGGGTTTCGGGCGAACAACTTTTATATCGAGTACCTGGTCGAGTCGTAGGGAATGATTCGGTGTATTGCTTCACATTTGGGAACTCAGATCTACTAGGTGTAGAGTCATTCATCATTGGACATCATCAACAACAAAATATGTGGATGGAATTTGATCTTGTGAAATCTAGGATTGGATTGGCTCATGTACGTTGTGATTTGGTGAGCCAAAAAGTGTTGGGCTTGGGATAG 1311 0.4043 MRCTIFTNPFLKILSFIILQTLPLITQTKMLTLPLKSQVIPSGYLPRPPNKLRFHHNVSLTVSITVGTPPQNVSLVIDTGSELSWLHCNNTTNRVSPDPFFNPNFSSSYKPVPCSSTTCTTRTRDFPIPASCDSNNLCHATLSYADFSSSEGNLAFDTFGFGGSDNPGIVFGCMESSISTNSDGDANATGLMGMNLGSLSFVSQLKIPKFSYCISGSDFSGILLLGGSNFSWTGSLNYTPLVQISTPLPYFDRAAYTIRLMEIRVSNKSLNLSESVLVPDHTGAGQTMFDLGTQFTFLLGPVYSALKEEFLNQTNSTLRVLDDPNFAFEVGMDLCFRVPLNQSKLPEIPSVSLVFDGAEMRVSGEQLLYRVPGRVVGNDSVYCFTFGNSDLLGVESFIIGHHQQQNMWMEFDLVKSRIGLAHVRCDLVSQKVLGLG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g4009 436 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 75 86 IPR001969 GO:0004190|GO:0006508
Tpr6g4009 436 PANTHER ASPARTYL PROTEASE-RELATED 14 432 IPR001461 GO:0004190|GO:0006508
Tpr6g4009 436 Gene3D Acid Proteases 228 429 IPR021109 -
Tpr6g4009 436 ProSiteProfiles Peptidase family A1 domain profile. 60 421 IPR033121 -
Tpr6g4009 436 Gene3D Acid Proteases 53 226 IPR021109 -
Tpr6g4009 436 PANTHER ASPARTIC PROTEINASE PCS1 14 432 - -
Tpr6g4009 436 SUPERFAMILY Acid proteases 61 426 IPR021109 -
Tpr6g4009 436 Pfam Xylanase inhibitor N-terminal 62 227 IPR032861 -
Tpr6g4009 436 CDD pepsin_A_like_plant 61 425 IPR034161 -
Tpr6g4009 436 Pfam Xylanase inhibitor C-terminal 255 420 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g4009 Tpr-Chr6 45292018 45294432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g4009 62 426 Miscellaneous Gene Families AT1G77480 23.907 1.53e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g4009 - - gmx:100813686 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g4009 6 45292018 45294432 Tpr6g4009 6 45292018 45294432 ECH
Tpr6g4009 6 45292018 45294432 Tpr7g4707 7 55324937 55326606 ECH
Tpr6g4009 6 45292018 45294432 Tpr3g2096 3 19334512 19336045 ECH