Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g4005 ATGATTGAGTACTCATCTATGTCAAAGACAATGATGGAGAAAATAATGACTTCTAATTGGTCAGAAGGGTCAGAACTTTTAAGAGACCTTTTAGTTGATGAGTCTAATTCTCTTCTTATGTTGCCACAAGGGATAGTAAATGAAGTAACCAACACAAGTCATGATGATTTTTCAAAAGACCAAGACTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCACTTTCAACAAATTTCATCAACAAGAGTTTCAATATTGGAAAGTAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATCAAATGCTTTGGCAATGGGATGAGTGATGATGGATATAGGTGGAGGAAGTATGGTCAAAAATCCATTAAAAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCTAGGTGTGGTGCTAAGAAGCAAGTTGAGAGATCCATTGAAGACCCTGACACTCTTATAATCACTTATGAAGGACTCCACTTACATTTTACTTATCCATATTTCTTAGTGGGCCAATCACATCAATCTACTGCTCATCCACCAATCAAGAAGTCCAAGCCCACTTCTTCACAAGAAGCCCATGAAGCCCAAACTAGTGCTTCTTTGGGACTCATATCACCAAATTTATTGGACTCTACACAAGATAAGGCCCAAGAAAATTTGGGCCGGCAAGGATTGCTCGAAGACATGGTACCATTCATGGTTAGGAACCCCACAAACAATGTTGATAGTGATTGA 801 0.3708 MIEYSSMSKTMMEKIMTSNWSEGSELLRDLLVDESNSLLMLPQGIVNEVTNTSHDDFSKDQDFNRFISNIYSGPTISDIENALLVTNHSNHFQQISSTRVSILESSLSKIENKYTLKIKCFGNGMSDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSIEDPDTLIITYEGLHLHFTYPYFLVGQSHQSTAHPPIKKSKPTSSQEAHEAQTSASLGLISPNLLDSTQDKAQENLGRQGLLEDMVPFMVRNPTNNVDSD* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g4005 266 MobiDBLite consensus disorder prediction 197 239 - -
Tpr6g4005 266 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 20 262 - -
Tpr6g4005 266 Pfam WRKY DNA -binding domain 127 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4005 266 SMART WRKY_cls 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4005 266 Gene3D WRKY domain 121 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g4005 266 ProSiteProfiles WRKY domain profile. 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4005 266 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 262 IPR044810 GO:0003700
Tpr6g4005 266 SUPERFAMILY WRKY DNA-binding domain 123 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g4005 Tpr-Chr6 45240899 45243899 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g4005 20 260 WRKY Transcription Factor Family AT5G43290 43.542 4.51e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr6g4005 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g4005 - - gmx:100803946 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g4005 6 45240899 45243899 Tpr6g4005 6 45240899 45243899 ECH