Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g4002 ATGATTGAGTACTCATCTATGTCAAAGACAATGATGGAGAAAATAATGACTTCTAATTGGTCAGAACTTTTAAGAGACCTTTTAGTTGATGAGTCTAATTCTCTTCTTATGTTGCCACAAGGGATAGTAAATGAAGTAACCAACACAAGTCATGATGATTTTTCAAAAGACCAAGTCTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCACTTTCAACAAAATTCATCAACAAGAGTTTCAATACTGGAAAAGAGTTTGAGTAAGATTGAAAATAAGTATACTTTGAAACTCAAATGCTTTGGCAATGGGATGAGTGATGATGGATATAGGTGGAGGAAGTATGGTCAAAAATCCATTAAAAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAAGTGTGGTGCTAAGAAGCAAGTTGAGAGATCCATTGAAGACCTTGACACTCTTATAATCACTTATGAAGGACTCCACTTACACTTCACTTATCCATATTTCTTAGTGGGCCAATCTAATTCTAATCCACCAATCAAGAAGTCCAAGCCCACTTCTTCACAAGGCCCAACCCAAGTCCATAAAGCAAATGATGTTCATGAAGGTCAGATTATACAGGAAGCCCATGAAGCCCAAACTAGTGCTTCTTTGGGACTCATACCACCCAATTTATTGGATTCTACACATGACAAGGTCCAAGAAAATTTGACCTCACAAGGATTGCTTGAAGACATGGTGCCACTCATGGTTAGGAACCCCACAAACAATGTTGATACTTGA 834 0.3693 MIEYSSMSKTMMEKIMTSNWSELLRDLLVDESNSLLMLPQGIVNEVTNTSHDDFSKDQVFNRFISNIYSGPTISDIENALLVTNHSNHFQQNSSTRVSILEKSLSKIENKYTLKLKCFGNGMSDDGYRWRKYGQKSIKNSPNPRSYYRCTNPKCGAKKQVERSIEDLDTLIITYEGLHLHFTYPYFLVGQSNSNPPIKKSKPTSSQGPTQVHKANDVHEGQIIQEAHEAQTSASLGLIPPNLLDSTHDKVQENLTSQGLLEDMVPLMVRNPTNNVDT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g4002 277 SUPERFAMILY WRKY DNA-binding domain 121 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g4002 277 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 274 IPR044810 GO:0003700
Tpr6g4002 277 ProSiteProfiles WRKY domain profile. 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4002 277 Gene3D WRKY domain 119 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g4002 277 SMART WRKY_cls 123 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4002 277 Pfam WRKY DNA -binding domain 124 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g4002 277 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 17 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g4002 Tpr-Chr6 45202236 45205092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g4002 35 274 WRKY Transcription Factor Family AT5G43290 44.358 1.94e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr6g4002 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g4002 - - gmx:100810459 354.369