Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3978 ATGAGTTTGAGCAAGTGCAATAATTTAATCTCATTTTTGAAGTTCATCACATTAATACTATGTTGTTCTTTATCATACGTTGTTGCAACAAACTCGTCACAAATCATCAAAGACTCCGAAACTTTAACCTCAAACAGAGGAAATTTCACCTTAGGATTCTTCACCCCTCAAAATTCCACAAACCGTTATGTAGGAATTTGGTGCAAAACTCAACACTTTGTTATATGGGTTGCTAATAGAAATCAACCATTGATCAATGATTCTTTAGGAGTTCTTACAATATATAATGATGGCAATCTTGTTGTATTGAATGGACAAAAAGATGTTATTTGGTCAACAAATGTTTCCAATATTACATTAGAAACCAATTCTAGTTTCAGACTTTCTGATTATGGAAGCCTTGTTTTGATGGATACAACAGAAAATACTATATGGGAGAGTTTCAAGAATCCTTCAAATGCATTATTACCAACCATGAAATTTACAAGTAACATGAAACTCGCATCGTGGAGAACCCCTTTTGATCCGTCCATCGGAAACTTCTCTATAAGCATCCAACGGTTGAATATTCCAGAACTTTTCATTTGGAATGAAACTCGGCCGTATTGGAGAAGTGGTCCATGGAACAATCAAATCTTTTTGGGGGTAGAGGACATGACAACTCTTTATCTTAATGGTTTTCATATGGAGAAAGATAGTACGGGAACTGTTGATTTATACTTCAGAACAGATGACTATGGACTCATGATGTATGTCCTCAATTCGACAGGTCAATTGAATGAAATGTCTTGGAATATCGAGAAGGAGGCATGGGAGGATACATGGACTAATCAAAGATCGGATTGCGATGTTTATAGTTTTTGTGGTCCATTTGGATTTTGTAATTCAAAAGGGTCACCAATTTGTAGCTGTTTGGAAGGTTTTGAACCAAGTAACAAACAAGAGTGGAATCAACAAAATTGGACTAGTGGATGTCTTAGGAAGACACTTTTGCAATGTGAGATTGCCAAAAATCAAAACAAGAGTACAAATGGTAATGAAAGAGATGGTTTTTTGAAATTGAGCAATGTAAAAGTGCCTGATTTTGCAGAATTGTCATTTGTTGACCAAGATGCATGCAAAAATCAGTGTTTGATGAATTGCTCTTGCACTGCATATTCATATGATGCTGATATTCATTGTATGTCTTGGAATGGAAATCTAATTGATATACAACAATTCCAAACTGGAGGAACTGATCTATACATTCGTGGACCCTATGCCGAACATGATATATCATCAGATAATGGGCACAAAAGAACAATCATCATTACAGTTTCAGTATTAATAGGAACTGTCATAATTGCCATTGCTGCATATTTGATTTGGAAAAAGACTTCAAATCCAGTGGGAAATATGAAGCATGGAATTTTTCACTTCAACAAAATAGAAAAAGCTGAAGAATACACTGACAATGTAATTGGAGAATTGTCACAAGCTAAGCTACAAGAGCTGTTACTATATAATTTTGAAAAGCTTGCAATTGCTACAAACAACTTCCATGAATCCAACAAACTTGGACAAGGTGGTTTTGGTCCTGTATACAAGGGAATACTACAAGACGGCAAGGAAATAGCGGTTAAAAGACTTTCTGTTTCATCCGGACAAGGGCTAAAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAGCTTCAGCACCGCAATCTTGTAAGGCTTTTAGGTTGCTGTATTGAAAGAGACGAAAAGATGTTGATGTACGAGTTCATGCCAAATAAAAGTTTGGATGCATATGTATTTGATCCATCAAGAAATAAACTGTTGGATTGGGAAAAACGCTTTAGCATAATTGAAGGAATCGCTCGTGGAATACTTTACCTACATAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCGAGCAACATCTTGCTTGATGAGGAGCTGAATCCAAAAATATCTGACTTTGGTATGGCTAGAATCTTTGGAGTGAGTGAAGATCGCGCCAATACACAAAGGGTTGTTGGAACGTATGGTTATATGGCTCCAGAATATGCAATGCATGGAGTATTTTCGGATAAATCAGATGTCTTCAGCTTTGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTTATGAAAGTGAAAATTCTCTGACTCTCTTAGGATTTGCCTGGATTCAATGGAAGGAAGACAACATTTTAAGTTTAATAGAACCAGAAATATATGATGATAGTCATCATAAGAATATTTTGAGGTGCATACATATAGGACTTCTATGTGTACAAGAAGCAGCAACAGACAGACCTACCATGGCTGCAGTGATTACTATGCTTAACAGTGAAACTATCGACATTCCACCTGCAAGACAACCTGCATTCCTCTTGAGGCAGAATATGATGAATACAATCTCTTCTGAATCGTATTCCAATAATGTTTTGAGTATCACAGACCTTCATGGAAGATAG 2484 0.3607 MSLSKCNNLISFLKFITLILCCSLSYVVATNSSQIIKDSETLTSNRGNFTLGFFTPQNSTNRYVGIWCKTQHFVIWVANRNQPLINDSLGVLTIYNDGNLVVLNGQKDVIWSTNVSNITLETNSSFRLSDYGSLVLMDTTENTIWESFKNPSNALLPTMKFTSNMKLASWRTPFDPSIGNFSISIQRLNIPELFIWNETRPYWRSGPWNNQIFLGVEDMTTLYLNGFHMEKDSTGTVDLYFRTDDYGLMMYVLNSTGQLNEMSWNIEKEAWEDTWTNQRSDCDVYSFCGPFGFCNSKGSPICSCLEGFEPSNKQEWNQQNWTSGCLRKTLLQCEIAKNQNKSTNGNERDGFLKLSNVKVPDFAELSFVDQDACKNQCLMNCSCTAYSYDADIHCMSWNGNLIDIQQFQTGGTDLYIRGPYAEHDISSDNGHKRTIIITVSVLIGTVIIAIAAYLIWKKTSNPVGNMKHGIFHFNKIEKAEEYTDNVIGELSQAKLQELLLYNFEKLAIATNNFHESNKLGQGGFGPVYKGILQDGKEIAVKRLSVSSGQGLKEFMNEVVVISKLQHRNLVRLLGCCIERDEKMLMYEFMPNKSLDAYVFDPSRNKLLDWEKRFSIIEGIARGILYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGVSEDRANTQRVVGTYGYMAPEYAMHGVFSDKSDVFSFGVLLIEIVSGRRNSSFYESENSLTLLGFAWIQWKEDNILSLIEPEIYDDSHHKNILRCIHIGLLCVQEAATDRPTMAAVITMLNSETIDIPPARQPAFLLRQNMMNTISSESYSNNVLSITDLHGR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3978 827 PIRSF SRK 2 827 IPR024171 GO:0004674
Tpr6g3978 827 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Tpr6g3978 827 CDD STKc_IRAK 519 785 - -
Tpr6g3978 827 CDD PAN_AP_plant 329 419 - -
Tpr6g3978 827 Pfam PAN-like domain 346 404 IPR003609 -
Tpr6g3978 827 Gene3D Transferase(Phosphotransferase) domain 1 589 791 - -
Tpr6g3978 827 ProSiteProfiles PAN/Apple domain profile. 333 419 IPR003609 -
Tpr6g3978 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 209 IPR036426 -
Tpr6g3978 827 Pfam Protein tyrosine and serine/threonine kinase 516 783 IPR001245 GO:0004672|GO:0006468
Tpr6g3978 827 SMART blect_4 33 151 IPR001480 -
Tpr6g3978 827 Pfam S-locus glycoprotein domain 203 311 IPR000858 GO:0048544
Tpr6g3978 827 Gene3D - 28 149 IPR036426 -
Tpr6g3978 827 CDD B_lectin 33 151 IPR001480 -
Tpr6g3978 827 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3978 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Tpr6g3978 827 Pfam D-mannose binding lectin 74 166 IPR001480 -
Tpr6g3978 827 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 824 - -
Tpr6g3978 827 SUPERFAMILY Protein kinase-like (PK-like) 501 816 IPR011009 -
Tpr6g3978 827 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 26 824 - -
Tpr6g3978 827 Gene3D Phosphorylase Kinase; domain 1 474 588 - -
Tpr6g3978 827 SMART ntp_6 346 418 IPR003609 -
Tpr6g3978 827 SMART serkin_6 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3978 Tpr-Chr6 45052933 45064774 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3978 499 827 Receptor kinase-like Gene Family AT4G23140 55.523 8.52e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g3978 PK_Tyr_Ser-Thr 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3978 - - mtr:MTR_7g056430 1035.02