Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3976 ATGCACACATCTTTTATTTCTTATGGTACCAAACTACCAAATTTATTCATTTCTAAAATGGGTTTATGCAAGTACAATAATTTGATCTTAGTTCTCAATTTCATCACATTATTACTATGTTGTTCTTCATCACAAATCATCAAAGACTCCGAAACTCTAACATCAAACAGTGGAAATTTCACCTTAGGATTCTTCACACCTCAAAATTCCACAAACCGTTATGTAGGAATTTGGAGCAAAACTCAAGTCTTTGTTATATGGGTTGCTAATAGAGATCAACCATTGATCAATGATTCTTTAGGAGTTCTTACAATATCAAATGATGGCAATCTTGTTGTATTGAATGGACAAAAAGATGTTATTTGGTCATCAAATGTTTCCAATGTTTCATCGAAAACCAATTCTAGTTTCACACTTTCGGATTATGGAAGTCTTGTTTTGATGGATTCAACAACAGGAAATACTATATGGGAGAGTTTTGATCATCCTTCAAATGCATTGTTACCAAGCATGAAGTTTACAAGTAACATGAACCTCACATCATGGAGAACCCCTTTTGATCCGTTGATCGGAAGCTTTTCTTTCAGCATTGAACGGTTGAAGATTCCGGAAGTTTTTGTTTGGAATAAAACTCGGCCATATTGGCGAAGTGGCCCGTGGAACGGTCAAATCTTTATTGGGATACAAGACATGGGAACACGGTATCTTAACGGTTTTCATTTTGAGAAAGATAGTACGAGAGGAACGGTTGATTTGTCTTTCAGAGTAGATGACTTTGGACTAGTGATCTACGCCTTGAATTCGCAAGGTCAACTTCATGAAAATTCTTGGAGTATTGAAAAGGAGGAATGGATTGTTACATGGACTAATCATAGATCGGATTGCGATGTTTATGGTTTTTGTGGTCCATTTGGAATTTGTAATTCAAAAGGGTCACCAATTTGTAGCTGTTTAGAAGGGTTTGAACCAAGAAACAAACAAGAGTGGAATCAAAAAAATTGGACTAGTGGATGTGTAAGGAAGACAGTTTTGCAATGTGAGATTGCGAAAAATCAAAACGAGAGTAAAAATGGTAATGAAGCAGATGGTTTCTTGAAATTGAACACGGTAAAAGTACCGGATTTTGCAGAATTGTCTTTTGATGAACAAGATGAATGCAAAAACCAGTGTTTGATGAATTGCTCTTGCATTGCATATTCATATGATGCTGATATTGGTTGTATGTCTTGGAATGGAAAACTAATTGATATACAACAATTCCAAACTGGAGGATCCGATCTAAACGTTCGTGTACCCTATGCTGAACTTGGCATATCAGATAAAGGGCATAAAGGAACAATCGTCATTATAATTTCAGTATTAACAGGAATTATCATAATTGTGATCATTGCTGCATATTTCATTTGTATGAGGGCTTCAAACCCTGTGAGAAAAAAGCAGAACAGAATTTTTCAATTCAACAAAATTGTAAAACCTGAAGGATACACTAACAATGCAATTGGAGAATTGTCACAAGAGAAGCTACAAGAGTTATTACTATATAATTTTGAAAAGCTTGCAACTGCTACAAACAACTTTGATTTATCCAACAAACTTGGACAGGGAGGTTTTGGTCCTGTATACAAGGGAATACTGCAAGATGGTAAGGAAATAGCGGTTAAAAGACTTTCTAGATCATCTGGACAAGGGCTAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAGCTTCAGCATCGCAATCTTGTAAGACTTTTAGGCTGTTGTATTGAAGGAGACGAAAAGATGTTGATGTATGAGTACATGCCAAATAGAAGTTTGGATGCATATGTTTTTGATCCGTCAAGAAATAAACTCCTGGATTGGGAAAAACGCTTCAACATTATAGAAGGAATAGCTCGTGGATTGCTTTATCTACACAGGGATTCTAGGCTAAAAATCATACACAGAGATTTGAAGGCGAGTAATATCCTTTTGGATGACGAGCTAAATCCAAAAATATCTGACTTTGGTATGGCCAGAATCTTTAAAGTGAGTGAAGATCATGCCAATACACAAAGAGTTGTCGGAACATATGGTTATATGGCTCCAGAATATGCAATGCAAGGAGTATTTTCGGATAAATCAGACGTCTTCAGCTTTGGAGTTTTGCTAATTGAGATTGTTTGTGGAAGAAGAAACTCAAGCTTTATTGAAAGTGAAAATGCTTTGACTCTCCTAGGAATTGCTTGGATTCAATGGAAAGAAGGCAATATTTTAAGTTTAATAGAACCAGAAATATATGATGATTGTCATCAAAAGAATATTTTGAGGTGCATACATATAGGACTTCTATGTGTACAAGAATCAGCTGCAGACAGACCTACTATGGCTGCAGTGGTTTCTATGCTTAACAGTGAAATTATGGACATTCCACCTGCAAGACAACCTGCATTCCTCTTGATGCAGAATATGATGAATACAGTCTCCTCTGAAGAAAGAATTGAATTGTATTCTAATAATGGTTTGAGTATCACAAACATTCATGGAAGATAG 2535 0.3578 MHTSFISYGTKLPNLFISKMGLCKYNNLILVLNFITLLLCCSSSQIIKDSETLTSNSGNFTLGFFTPQNSTNRYVGIWSKTQVFVIWVANRDQPLINDSLGVLTISNDGNLVVLNGQKDVIWSSNVSNVSSKTNSSFTLSDYGSLVLMDSTTGNTIWESFDHPSNALLPSMKFTSNMNLTSWRTPFDPLIGSFSFSIERLKIPEVFVWNKTRPYWRSGPWNGQIFIGIQDMGTRYLNGFHFEKDSTRGTVDLSFRVDDFGLVIYALNSQGQLHENSWSIEKEEWIVTWTNHRSDCDVYGFCGPFGICNSKGSPICSCLEGFEPRNKQEWNQKNWTSGCVRKTVLQCEIAKNQNESKNGNEADGFLKLNTVKVPDFAELSFDEQDECKNQCLMNCSCIAYSYDADIGCMSWNGKLIDIQQFQTGGSDLNVRVPYAELGISDKGHKGTIVIIISVLTGIIIIVIIAAYFICMRASNPVRKKQNRIFQFNKIVKPEGYTNNAIGELSQEKLQELLLYNFEKLATATNNFDLSNKLGQGGFGPVYKGILQDGKEIAVKRLSRSSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEKMLMYEYMPNRSLDAYVFDPSRNKLLDWEKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDDELNPKISDFGMARIFKVSEDHANTQRVVGTYGYMAPEYAMQGVFSDKSDVFSFGVLLIEIVCGRRNSSFIESENALTLLGIAWIQWKEGNILSLIEPEIYDDCHQKNILRCIHIGLLCVQESAADRPTMAAVVSMLNSEIMDIPPARQPAFLLMQNMMNTVSSEERIELYSNNGLSITNIHGR* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3976 844 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Tpr6g3976 844 ProSiteProfiles Protein kinase domain profile. 526 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3976 844 PIRSF SRK 18 844 IPR024171 GO:0004674
Tpr6g3976 844 Gene3D - 41 160 IPR036426 -
Tpr6g3976 844 CDD STKc_IRAK 532 798 - -
Tpr6g3976 844 Gene3D Transferase(Phosphotransferase) domain 1 602 804 - -
Tpr6g3976 844 Pfam PAN-like domain 359 417 IPR003609 -
Tpr6g3976 844 CDD B_lectin 44 163 IPR001480 -
Tpr6g3976 844 SMART serkin_6 526 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3976 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 222 IPR036426 -
Tpr6g3976 844 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 841 - -
Tpr6g3976 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Tpr6g3976 844 ProSiteProfiles PAN/Apple domain profile. 346 432 IPR003609 -
Tpr6g3976 844 Pfam Protein tyrosine and serine/threonine kinase 528 797 IPR001245 GO:0004672|GO:0006468
Tpr6g3976 844 ProSiteProfiles Bulb-type lectin domain profile. 38 160 IPR001480 -
Tpr6g3976 844 Gene3D Phosphorylase Kinase; domain 1 493 601 - -
Tpr6g3976 844 SMART blect_4 44 163 IPR001480 -
Tpr6g3976 844 SUPERFAMILY Protein kinase-like (PK-like) 514 824 IPR011009 -
Tpr6g3976 844 CDD PAN_AP_plant 342 432 - -
Tpr6g3976 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 38 841 - -
Tpr6g3976 844 SMART ntp_6 359 431 IPR003609 -
Tpr6g3976 844 Pfam D-mannose binding lectin 85 178 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3976 Tpr-Chr6 45034027 45038141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3976 512 814 Receptor kinase-like Gene Family AT4G23140 58.900 6.01e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g3976 PK_Tyr_Ser-Thr 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3976 - - mtr:MTR_7g056430 1012.29