Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3975 ATGGATTTCAGCTACTGTGCATATTTGGTCTCTGTATTGTTCATTTTGTGTTGCTATTTGTTACAAGTTAGTGTTGGTATAGATACCATCACATCATCTCAATTCATCAAGGACCCTGAAACACTAATATCCAACGATGGTAACTTCACCTTTGGATTCTTTAGCCCAATAAATTCTACAAATCGCTACGTTGGAATTTGGTGGAAATCTCAATCTACAATCATATGGGTAGCAAACAGAAATCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAATCTTGTGGTATTAAATGAACAGAATCGAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATACTAGTTGTCAGTTTTCAGACTTTGGTAACCTTGTCCTTTTGGAGAGCACAACTGGAAACATCTTATGGCAGAGTATTCAGCAACCTTCGGATACATTATTGCCTGGCATGAAACTTTCAATCAACACAAGAACAGGTAAGAGTGTAAAACTCAAATCATGGAAAAGCCCTTCTGGCCCATCTGTTGGAAACTTCTCTTGTGGTACTGTTGAACACCTACATATAATTGAAGTGTTCATTTGGAATAATACTCTTCCATATTGGCGCAGTGGTCCTTGGAATGGCGGGGTCTTCACTGGGATACAGACAATGACAGTGGCATATTTTTTTGGTTTTCGAGGGGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATACAAAATGATGAGGAATTTTTTATCTATCACCTGAATTCGCAAGGAAAATTAGAAGAAACATGGTGGGATGATGAAAAGAAAGAAAAGCTAGTTACATGGACAAGCAGAGAATCAGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAATTCATTGAGCTCACCAATATGTAGCTGTTTGAGAGGATTTGAACCCCGAAATATTCAAGAATGGAATATACATATCTGGACCGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAACAATAAAACCAAAAGTACAAAGGAAGATGGGTATTTGAAACTTCGGATGGTTAAAGTTCCAGATTTTGCTGAAGGTTTAGCTGTTACACCAGATATATGCAGAAGCCTATGTTTGGAGAATTGCTCTTGCCTTGCATATTCTCATGAGGCTGTGATTGGCTGTATGACTTGGACTGGGAATCTACTTGACATACAACAACTCGAAAGTGGAGGACTTGATCTATATGTTCGCGTAGCATATGCAGAACTTGATCGAGGGAGAAACAAGACAATCATCATTGTAAGCACAGTGATTATTGGAACTCTCATAGTTGTCATTTTTGCATATATAATCTGGAGAAGGACATCAAACCACCCAGCTAAACTGTGGCTTTTTACTAAATCAGCAAGGAAAAAGAACAACCAAGCTTTCCAACGTTTTAAAAAAGGTGGATCACCAGAAGGATATGCTAGTGACAATGTATTTGGAGAAATGTCCCAAGTTAAACTACAAGAGCTATTAATATTTGATTTTGAAAAGCTCGCAACTGCCACAAACAACTTCCACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCTGTATACAAGGGGAAACTACAAGATGGTCGGGAAATAGCTGTTAAAAGACTATCTAGAGCATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTTGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATTGAAGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCATCAAAAAATAAACTCCTAGACTGGAGGACACGGTGTAGCATAATAGATGGAATTGCTCGAGGATTGCTATATCTTCACAGAGATTCTAGACTAAGAATTATTCACAGAGATTTGAAGGCAAGTAATATTTTGTTAGACGACGAGCTGAATCCGAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGTGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGAACTTATGGCTATATGTCTCCTGAATATGCAATGCAAGGATTATTTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTTTTGATACTAGAGATTGTTACCGGGAGAAGGAACTCAAGTTTTTATGACAATGACCATGCTCCGAGCCTTTTAGGATCTGTGTGGATAAAATGGAGGGATGACAATATTTTATCTCTCATAGATGAAGGAATATATGATCCTAGTCATCATAATTACATTTTAAGGTACATACGTATAGGACTTTTGTGCACACAAGAACTTGCTGTAGATAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAAACTGCATTACTTCCATCTCCTAGTAAGCCTGCATTTATCCTGATGAAGAATATGTTGAATCCAAATGGGCCTGAAGAATGTCAAAGTGGTAGTTCTATCAATAATATCAGTATTACAGATATCTATGGCAGATACAAGTCAGACTGGCTTATGTATCATAGTCTAACTGTTGATCATATAATGGGTTTCAGCTGCTGTTCAAATCTGTTCTTTGTTTGGTTCATTCTGTTTTTCTATTTTTTACAAGTTTGTATTTCTATAGACACCATCACATCATCTCAATTTATCAAGGACCCTGATACTCTACTCTCCAAAGATAGTAACTATGCCTTGGGATTCTTTAGCCCTGAAAATTCTACAAATCGCTACGTTGGAATTTGGTGGAAGTCTAAATCCACAAACATATGGGTGGCAAACAGAAACCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGTAATCTAGTGGTGTTAAATGGACAGAAACAAGTCATGTGGTCATCGAATGTATCCAGTATAGCATCCAATACAACGTCCAAGTTTTCAGACAATGGTAACCTTGTCCTTTTGGAGAGCACAACTGGAAACATCTTATGGCAGAGTATTCAGCAACCTTCGGATACGTTACTGCCTGGGATGAAACTATCAATCAACAAAAGAACAGGTAAGAGTGTCAAACTTAAATCATGGAAAAGCCCTTCTGATCCATCTGATGGGAGTTTCTCTTCTAGTATTGTTGAACGCCGAAATATACTTGAAGTGTTTATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCTTGGAATGGTGGGGTCTTTACAGGGATAGATACTATGGTGGCTGCATATTATAACGGTTTTCAAGGTGGAGATGATGGAGAAGGGAATATTAATATATATTATACAATCCCAGATGGTAAGGTTTTCTTGTTCTATAACCTCAATTCACAAGGAATTTTAGATGAAAAATCGTGGGATGAGGAGAAGAAAGAAGTGCAAGTTACATGGACTAGCCGAAAGTCGGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGATGCAGTTCATTGAGCACACCAATATGCAGTTGTTTGAAAGGATTTGAACCCTTGAGCATTCAAGAATGGAATAGAAACAACTGGACTGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCATCAACAAAACAACAACTACAAAGAAAGATGGGTTTTTGAAATTGCACGCGGTTAAAGTTCCAGATTTTGGCGAAGGTTTAGCTGTTACGCCAGATATTTGCCGAAGCTTGTGCTTGGAGAATTGTTCTTGCACTGCATATTCTAACGATGCTGGGATCGGCTGTATGTCTTGGACAGGGAATTTAATTGACATAGAACAGCTCCAAATTGGAGGACTTGATCTATATTTTCGCGTTTCCCACGCAGAGCTTGATAGCGGGGGAAACCAAACAATCATCATTACAATTTCAGTGATAATAGGAACTCTCGCAATTTCCATTTGTGCATATATCATGTGGAGAAAGAACTCAGCTAAATTGTGGCACTCTATCAAATCAACAAGGATAACAAACAACAATGCTTTTCGACTATTTTATAAAGGTGGAACATCAGAAGTTCATACTTGTGACAATGTAAATGGAGAACTATCCCAAGTTAAACTACATGAGCTATTACTATTTGATTTTGAAAAGCTTGCAACCGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGAAAACTGCAAGATGGTCAAGAAATTGCAGTTAAAAGACTTTCTAGAGCATCTGGCCAAGGGCTTGAAGAATTCACGAATGAAGTTGTAGTCCTTTGTAAGCTTCAACACCGTAATCTTGTAAGACTTCTTGGCTGCTGTGTTGACGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTTATATTTGATCCATCAAAAAATAAACTTCTAGATTGGGGAACACGGTATAAAATTATAGATGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCGAGACTAAGAATTATACACAGAGATTTGAAGGTAAGTAATATCTTGTTAGACGATGAGCTGAATCCAAAAATATCTGACTTTGGTATGGCTAGGATCTTTGGAGGGAGAGAAGATCATGCAAATACTAATAGGGTTGTCGGAACTTATGGCTATATGTCTCCCGAATACGCAATGCAAGGACATTTTTCAGAGAAATCAGACGTTTTTAGCTTTGGTGTTTTGATACTAGAAATCATTACTGGTAGAAGGAACTCAAGCTGTTGTGACAATGAGCATGCTCTGACTCTTTTAGGATTTGTCTGGATTCAATGGAAGGAAGACAATGTTTTATCGTTCATAGAACCAGAAATATACGATCATAGTCATCATAAGAATATTTTGAGATGCATACATATAGGACTTTTATGTGTACAAGAATCAGCCGTAGACAGGCCTACAATGGCAACAGTAATTTCGATGCTTAACAGTGAGGTTGCATCTCTTCCTCCTCCAAATGAACCTGCATTCATCTTGAGGCAGAATATGTTGAATCCAAAGTCACCCGAAGAAAATGAAAGTATTAACAATGTTAGCATTACAGAGGTATATGGTAGATAG 5085 0.3839 MDFSYCAYLVSVLFILCCYLLQVSVGIDTITSSQFIKDPETLISNDGNFTFGFFSPINSTNRYVGIWWKSQSTIIWVANRNQPLNDSNGIVTISEDGNLVVLNEQNRVIWSSNVSNIASNTSCQFSDFGNLVLLESTTGNILWQSIQQPSDTLLPGMKLSINTRTGKSVKLKSWKSPSGPSVGNFSCGTVEHLHIIEVFIWNNTLPYWRSGPWNGGVFTGIQTMTVAYFFGFRGGDDGEGNTNIYYTIQNDEEFFIYHLNSQGKLEETWWDDEKKEKLVTWTSRESECDVYGICGAFASCNSLSSPICSCLRGFEPRNIQEWNIHIWTGGCVRRTPLQCERVNNKTKSTKEDGYLKLRMVKVPDFAEGLAVTPDICRSLCLENCSCLAYSHEAVIGCMTWTGNLLDIQQLESGGLDLYVRVAYAELDRGRNKTIIIVSTVIIGTLIVVIFAYIIWRRTSNHPAKLWLFTKSARKKNNQAFQRFKKGGSPEGYASDNVFGEMSQVKLQELLIFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRCSIIDGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKISDFGMARIFGGGEDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVTGRRNSSFYDNDHAPSLLGSVWIKWRDDNILSLIDEGIYDPSHHNYILRYIRIGLLCTQELAVDRPTMAAVISMLNSETALLPSPSKPAFILMKNMLNPNGPEECQSGSSINNISITDIYGRYKSDWLMYHSLTVDHIMGFSCCSNLFFVWFILFFYFLQVCISIDTITSSQFIKDPDTLLSKDSNYALGFFSPENSTNRYVGIWWKSKSTNIWVANRNQPLNDSNGIVTISEDGNLVVLNGQKQVMWSSNVSSIASNTTSKFSDNGNLVLLESTTGNILWQSIQQPSDTLLPGMKLSINKRTGKSVKLKSWKSPSDPSDGSFSSSIVERRNILEVFIWNETRPYWRSGPWNGGVFTGIDTMVAAYYNGFQGGDDGEGNINIYYTIPDGKVFLFYNLNSQGILDEKSWDEEKKEVQVTWTSRKSECDVYGICGAFARCSSLSTPICSCLKGFEPLSIQEWNRNNWTGGCVRRTPLQCERVINKTTTTKKDGFLKLHAVKVPDFGEGLAVTPDICRSLCLENCSCTAYSNDAGIGCMSWTGNLIDIEQLQIGGLDLYFRVSHAELDSGGNQTIIITISVIIGTLAISICAYIMWRKNSAKLWHSIKSTRITNNNAFRLFYKGGTSEVHTCDNVNGELSQVKLHELLLFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFTNEVVVLCKLQHRNLVRLLGCCVDGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWGTRYKIIDGIARGLLYLHRDSRLRIIHRDLKVSNILLDDELNPKISDFGMARIFGGREDHANTNRVVGTYGYMSPEYAMQGHFSEKSDVFSFGVLILEIITGRRNSSCCDNEHALTLLGFVWIQWKEDNVLSFIEPEIYDHSHHKNILRCIHIGLLCVQESAVDRPTMATVISMLNSEVASLPPPNEPAFILRQNMLNPKSPEENESINNVSITEVYGR* 1695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3975 1694 SMART blect_4 33 149 IPR001480 -
Tpr6g3975 1694 SMART blect_4 891 1007 IPR001480 -
Tpr6g3975 1694 Pfam PAN-like domain 349 407 IPR003609 -
Tpr6g3975 1694 Pfam PAN-like domain 1206 1265 IPR003609 -
Tpr6g3975 1694 ProSiteProfiles Protein kinase domain profile. 524 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3975 1694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1500 1512 IPR008271 GO:0004672|GO:0006468
Tpr6g3975 1694 SMART ntp_6 1207 1279 IPR003609 -
Tpr6g3975 1694 SMART ntp_6 349 421 IPR003609 -
Tpr6g3975 1694 CDD STKc_IRAK 1385 1651 - -
Tpr6g3975 1694 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 179 IPR036426 -
Tpr6g3975 1694 Gene3D Phosphorylase Kinase; domain 1 499 599 - -
Tpr6g3975 1694 CDD STKc_IRAK 530 796 - -
Tpr6g3975 1694 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Tpr6g3975 1694 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 879 1691 - -
Tpr6g3975 1694 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 21 839 - -
Tpr6g3975 1694 SUPERFAMILY Protein kinase-like (PK-like) 1358 1650 IPR011009 -
Tpr6g3975 1694 ProSiteProfiles PAN/Apple domain profile. 1197 1280 IPR003609 -
Tpr6g3975 1694 CDD PAN_AP_plant 1193 1280 - -
Tpr6g3975 1694 Gene3D - 881 1005 IPR036426 -
Tpr6g3975 1694 Gene3D - 23 147 IPR036426 -
Tpr6g3975 1694 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Tpr6g3975 1694 ProSiteProfiles Bulb-type lectin domain profile. 885 1004 IPR001480 -
Tpr6g3975 1694 CDD B_lectin 33 145 IPR001480 -
Tpr6g3975 1694 SMART serkin_6 1379 1655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3975 1694 SMART serkin_6 524 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3975 1694 CDD PAN_AP_plant 335 422 - -
Tpr6g3975 1694 ProSiteProfiles Protein kinase domain profile. 1379 1665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3975 1694 Pfam Protein tyrosine and serine/threonine kinase 525 795 IPR001245 GO:0004672|GO:0006468
Tpr6g3975 1694 Pfam Protein tyrosine and serine/threonine kinase 1380 1650 IPR001245 GO:0004672|GO:0006468
Tpr6g3975 1694 Pfam D-mannose binding lectin 73 175 IPR001480 -
Tpr6g3975 1694 Pfam D-mannose binding lectin 931 1033 IPR001480 -
Tpr6g3975 1694 Gene3D Transferase(Phosphotransferase) domain 1 1455 1657 - -
Tpr6g3975 1694 Gene3D Transferase(Phosphotransferase) domain 1 600 802 - -
Tpr6g3975 1694 CDD B_lectin 891 1003 IPR001480 -
Tpr6g3975 1694 SUPERFAMILY Protein kinase-like (PK-like) 511 819 IPR011009 -
Tpr6g3975 1694 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Tpr6g3975 1694 Pfam S-locus glycoprotein domain 1066 1174 IPR000858 GO:0048544
Tpr6g3975 1694 SUPERFAMILY alpha-D-mannose-specific plant lectins 923 1038 IPR036426 -
Tpr6g3975 1694 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 839 - -
Tpr6g3975 1694 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 879 1691 - -
Tpr6g3975 1694 Gene3D Phosphorylase Kinase; domain 1 1343 1454 - -
Tpr6g3975 1694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3975 Tpr-Chr6 45017299 45027975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3975 428 842 Receptor kinase-like Gene Family AT4G21410 48.585 8.30e-113 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g3975 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3975 - - gsj:114424251 2352.4