Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3973 ATGGATTTCAGCTACTGTGCATATTTGGTTTCTGTTTTGTTCATTTTGTGTTGCTATTTGTTACAAGTTAGTGTTGGTATAGACACCATCACATCATCTCATTTCATCAAGGACCCTGAAACACTAATATCCAACGATGGTAACTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACATTGGAATTTGGTGGAAATCTCAATCTACAATAATATGGGTGGCAAACAGAAACCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAATATTGTGGTATTAAATGGAAAGAAACAAGTCATTTGGTCATCCAATGTTTCCAACATAGCATCCAATACAAGTTGTCAGTTTTCAGACTTTGGTAACCTTGTCCTTTTGGAGAGCACAACTGGAAACACCTTATGGCAGAGTATTCAGCAACCTTCAGATACGTTAATTCCTGGCATGAAACTTTCAATCAACAAAAGAAGGGGTAAAAATATAAACCTCGAATCATGGAAAAGCCCTTCCGACCCATCTGTTGGCAACTTCTCTTGTAGTACTGTTGAACACTTGCATATAATTGAAGTCTTCGTTTGGAATGATACTCGTCCATATTGGCGCAGTGGTCCTTGGAATGGTGGGGTCTTCACTGGGATACAGACAATGACAGTGGCATATTTTTTTGGTTTTCAAGCGGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATACAAAATGACGAGGAATTTTTTATGTATCACCTGAATTCGCAAGGAAAATTAGAAGAAACATGGTGGGATGATGAGAAGAAAGAAATGCAAGTTAGATGGACAAATCGAGAATCAGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGATGTCATTCATTGAGCTCACCAATATGTAGCTGTTTGAGAGGATTTGAACCCCGAAATATACATGAATGGAATATACATAACTGGACTGGAGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAACAATAAAACCACGAGTACAAAGGAAGACGGGTTTTTGAAACTACATATGGTTAAAGTTCCAGTTTTTGCTGAAGGTTTAGCTGTTACACCAGACATATGCAGAAGCCTATGTTTGGAGAATTGCTCTTGCCTTGCATATTCTCATGAAGCTGTGATTGGCTGTATGACTTGGACTGGGAATCTACTTGACATAGAACAACTCGAAAATGGAGGACTTGATCTATATGTTCGCGTAGCATATGCAGAACTTGATCGAAGGAGAAACAAGACAATCATCATTGTAATTACAGTGATTGTTGGAACTCTCATGGTTGTCATTTTTGCATATATAATATGGAGAAGGGCATCAAACCACCCAGGTGGATCACCAGAAGGATTTTCTAGTGACAACGTAATTGGAGAAATGTCCCAAGTTAAACTACACGAGCTATTAATATTTGATTTTGAAAAGCTGGCAACAGCCACAAACAACTTCCACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCTGTATACAAGGGGAAACTACAAGATGGTCGGGAAATAGCTGTTAAAAGACTCTCTAGAGCATCTGGACAAGGGTTGGAGGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATTGAAGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCATCAAAAAATAAACTCCTAAACTGGAGGACACGGTACAACATAATAGAAGGAATAGCTCGAGGACTGCTGTATCTTCACAGAGATTCTAGACTAAGAATTATTCACAGAGATTTGAAGGCAAGTAATATCTTATTAGACGACGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGCACTTAG 2001 0.3883 MDFSYCAYLVSVLFILCCYLLQVSVGIDTITSSHFIKDPETLISNDGNFTFGFFSPINSTNRYIGIWWKSQSTIIWVANRNQPLNDSNGIVTISEDGNIVVLNGKKQVIWSSNVSNIASNTSCQFSDFGNLVLLESTTGNTLWQSIQQPSDTLIPGMKLSINKRRGKNINLESWKSPSDPSVGNFSCSTVEHLHIIEVFVWNDTRPYWRSGPWNGGVFTGIQTMTVAYFFGFQAGDDGEGNTNIYYTIQNDEEFFMYHLNSQGKLEETWWDDEKKEMQVRWTNRESECDVYGICGAFARCHSLSSPICSCLRGFEPRNIHEWNIHNWTGGCVRRTPLQCERVNNKTTSTKEDGFLKLHMVKVPVFAEGLAVTPDICRSLCLENCSCLAYSHEAVIGCMTWTGNLLDIEQLENGGLDLYVRVAYAELDRRRNKTIIIVITVIVGTLMVVIFAYIIWRRASNHPGGSPEGFSSDNVIGEMSQVKLHELLIFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLNWRTRYNIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKISDFGMARIFGGGEDQANTNRIVGT* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3973 666 Pfam D-mannose binding lectin 73 175 IPR001480 -
Tpr6g3973 666 CDD B_lectin 33 145 IPR001480 -
Tpr6g3973 666 ProSiteProfiles Protein kinase domain profile. 501 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3973 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Tpr6g3973 666 Pfam Protein tyrosine and serine/threonine kinase 502 651 IPR001245 GO:0004672|GO:0006468
Tpr6g3973 666 CDD PAN_AP_plant 335 422 - -
Tpr6g3973 666 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Tpr6g3973 666 Gene3D - 23 147 IPR036426 -
Tpr6g3973 666 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 12 664 - -
Tpr6g3973 666 Pfam PAN-like domain 349 407 IPR003609 -
Tpr6g3973 666 Gene3D Transferase(Phosphotransferase) domain 1 577 666 - -
Tpr6g3973 666 SMART serkin_6 501 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3973 666 SMART ntp_6 349 421 IPR003609 -
Tpr6g3973 666 SMART blect_4 33 149 IPR001480 -
Tpr6g3973 666 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Tpr6g3973 666 SUPERFAMILY Protein kinase-like (PK-like) 484 666 IPR011009 -
Tpr6g3973 666 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Tpr6g3973 666 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Tpr6g3973 666 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Tpr6g3973 666 PANTHER - 12 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3973 Tpr-Chr6 44988232 44990858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3973 434 666 Receptor kinase-like Gene Family AT4G23190 53.617 3.77e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g3973 PK_Tyr_Ser-Thr 1.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3973 - - mtr:MTR_7g056623 1029.62