Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3972 ATGGATTTCAGCTGCTGTTCAAAGCTGTTCTTTGTTTTGTTCATACTGTTTTTCTATTTGTTACAAGTTTGTATTTCCATAGACACCATCACATCATCTCAATTCATCAAGGACCCTGACACTCTACTCTCCAAAGATGGTAATTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACGTTGGAATTTGGTGGAAGCTTCAATCTACAACAATATGGGTGGCAAACAGAAACCAACCACTGAATGATTCTAATGGGATTATCACAATATCTGAAGATGGAAATCTTGTGGTATTGAACGGACAGAAACAAGTCATTTGGTCATCGAATGTTTCCAATATAGCATCCAATACCACTTCTCAGTTTTCGGATTTCGGTAACCTTGTCCTTAGGGAGAGCACAACTGGAAACATCTTATGGAAGTGTATTCAGGATCCTTCGGATACATTACTTCCTGATATGAAACTTTCTATGAGCAAAAGAACAGGTAAGAGTGTAAACCTCAAATCATGGAAAAGCCCTTCTGATCCATCTGTTGGCAACTTCTCTTGCAGTACGTTTGAATACCTACATATAATTGAAGTGTTCGTTTGGAATGATACTCGTCCATATTGGCGCAGTGGTCCTTGGAATGGAGAGGTCTTCACTGGGGTACAGACAATGACAGTGGCATATTTTTTTCGTTTTCGAGGAGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATACAAAATGATGAGGAATTTTTTATCTATCACCTGAACTCGCAAGGAAAAGTAGAAAAAACATTTTGGGATGAAGAGAAGAAAGAAATGCAAGTTAGATGGACAAGCCGAGAATCAGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGATGTAATTCATTGAGCTCACCAATATGTAGCTGTTTGAGAGGATTTGAACCCCGAAATATACATGAATGGAATATACATAACTGGACCGGAGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGCGTCAACAATAAAACCACAAATACAAATCAAGATGGGTATTTGAAACTACAGATGGTTAAAGTTCCAGATTTTGCCGAAGGTTTAGCTGTTACACCAGATATATGCAAAAGCCTATGTTTGGAGAATTGCTCTTGCCTTGCATATTCTCATGAGGCTGTGATTGGCTGTATGACTTGGACCAGGAATCTAATTGACATAGAACAACTCGAAAGTGGAGGACTTGATCTATATGTTCGCGTAGCATATGCAGAACTTGATCGAGGGAGAAACAAGACAATCATCATTGTAAGTACGGTGATTGTTGGAACTCTCATAGTTGTCATTTTTGCATATATAATCTGGAGAAGGACATCAAATCACCCAGGTGGAACATCAGAAGTTCATACTAGTGACAATGTAATTGGAGAAATGTCCCAAGCTAAACTACAAGAGCTATTAATATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCGACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCCGTATACAAGGGGAAACTGCAAGATGGTCAAGAAATAGCAGTTAAGAGACTATCTAGAGCATCTGGCCAAGGGCTAGAAGAATTCATGAATGAAGTTGTGGTCCTTTGTAAGCTTCAACACCGTAATCTTGTAAGACTTCTTGGCTGCTGTGTTGACGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTTATATTTGATCCATCAAAAAATAAACTCCTTGATTGGAGGACACGGTATAGCATTATAGAAGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCTAGACTAAGAATTATACATAGAGATTTGAAAGTAAGTAATATCTTGTTAGACGAGGCGCTGAATCCAAAAATATCTGACTTTGGTATGGCTAGAATCTTTGGAGGGAGAGAAGATCATGCAAATACTAATAGGGTTGTCGGAACTTATGGCTATATGTCTCCCGAATATGCAATGAAAGGACTTTTCTCAGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATACTAGAGATCATTATTGGTAGAAGGAACTCAAGCTTTTATGACAATGAGCTTGCTTTGAATCTATTAGGATTTGTTTGGATTCACTGGAGGGAAGACAATATTTTGTCTATAATAGAATCAGAAATATATGATCATAATCATCACATGAATGTTTTGAGATGCATACAAATAGGACTTTTATGTGTACAAGAATCATCTGTAGACAGGCCTACTATGGCTACAGTAATTTCGATGCTTGACAGTGAGGTTGCATCTCTTCCTCCTCCAAATGAACCTGCATTCCTCTTGATGCAGAATATCAATCTGCCACCTGAAGAAAATCAAAGCATTAATAAAGTCAGTATTACAGAAGTATCTGGCAGATAG 2445 0.3804 MDFSCCSKLFFVLFILFFYLLQVCISIDTITSSQFIKDPDTLLSKDGNFTFGFFSPINSTNRYVGIWWKLQSTTIWVANRNQPLNDSNGIITISEDGNLVVLNGQKQVIWSSNVSNIASNTTSQFSDFGNLVLRESTTGNILWKCIQDPSDTLLPDMKLSMSKRTGKSVNLKSWKSPSDPSVGNFSCSTFEYLHIIEVFVWNDTRPYWRSGPWNGEVFTGVQTMTVAYFFRFRGGDDGEGNTNIYYTIQNDEEFFIYHLNSQGKVEKTFWDEEKKEMQVRWTSRESECDVYGICGAFARCNSLSSPICSCLRGFEPRNIHEWNIHNWTGGCVRRTPLQCESVNNKTTNTNQDGYLKLQMVKVPDFAEGLAVTPDICKSLCLENCSCLAYSHEAVIGCMTWTRNLIDIEQLESGGLDLYVRVAYAELDRGRNKTIIIVSTVIVGTLIVVIFAYIIWRRTSNHPGGTSEVHTSDNVIGEMSQAKLQELLIFDFEKLATATNNFDLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVLCKLQHRNLVRLLGCCVDGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRYSIIEGIARGLLYLHRDSRLRIIHRDLKVSNILLDEALNPKISDFGMARIFGGREDHANTNRVVGTYGYMSPEYAMKGLFSEKSDVFSFGVLILEIIIGRRNSSFYDNELALNLLGFVWIHWREDNILSIIESEIYDHNHHMNVLRCIQIGLLCVQESSVDRPTMATVISMLDSEVASLPPPNEPAFLLMQNINLPPEENQSINKVSITEVSGR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3972 814 SMART blect_4 33 149 IPR001480 -
Tpr6g3972 814 Pfam D-mannose binding lectin 73 175 IPR001480 -
Tpr6g3972 814 Gene3D - 23 146 IPR036426 -
Tpr6g3972 814 CDD B_lectin 33 143 IPR001480 -
Tpr6g3972 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Tpr6g3972 814 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 811 - -
Tpr6g3972 814 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3972 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Tpr6g3972 814 ProSiteProfiles Protein kinase domain profile. 501 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3972 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Tpr6g3972 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 21 811 - -
Tpr6g3972 814 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Tpr6g3972 814 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Tpr6g3972 814 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Tpr6g3972 814 Pfam PAN-like domain 349 407 IPR003609 -
Tpr6g3972 814 CDD PAN_AP_plant 335 422 - -
Tpr6g3972 814 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Tpr6g3972 814 SMART ntp_6 349 421 IPR003609 -
Tpr6g3972 814 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Tpr6g3972 814 CDD STKc_IRAK 507 773 - -
Tpr6g3972 814 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Tpr6g3972 814 SUPERFAMILY Protein kinase-like (PK-like) 488 794 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3972 Tpr-Chr6 44981161 44984581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3972 424 789 Receptor kinase-like Gene Family AT4G05200 51.762 7.12e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr6g3972 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3972 - - mtr:MTR_7g056623 1204.12