Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3970 ATGAAATTGAGTTGCAATGGGTGTCGCGCACTTCGCAAAGGATGCAGTGAAGACTGCATCATCAAGCCTTGCCTTGAGTGGATCAGTTCCCCTGAAGCCCAAGGTCATGCCACGCTCTTTCTTGCCAAGTTTTATGGCCGAACTGGCTTGCTCAACCTCCTTGCTAACGCTACCAATCAAAAGGCCCAAGTTGTGTTCAAGTCATTGTTGTACGAGGCTGCAGGTAGATTGGTGAATCCCACACATGGAGCGCTAGGTTTATTTTGGATAGGACAATGGAGCCGATGTGAAGCTACAGTTGAATCTGTGCTAACCGGATCAAATATTAATGACGTTACAACTGTTGATGGGCAAACATCATCAGGCACACTCATTCCTGAAAATCATGTTCTTCCAACAACCTCTGATATACGCCATGTGGCAAGAGGTACCAATGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGCTGGGTCAATTTTCAAGCCTAAGCCGCGAGTTGGTTGGGCCGACAATGCTACACTTTTGAAATCAATTTTAGAGAATGGCAGCCTGAAAATTGTCGAGGCTTCATCGATGATCGAGAAAGAGCTGAATGGAGCTGCTGAAACTCAAGTGAACTTCGAACTCACTCTTGGCTTCAATTGTCAATCAAGCAATGACAAAAAATCATATGATAATTAA 684 0.443 MKLSCNGCRALRKGCSEDCIIKPCLEWISSPEAQGHATLFLAKFYGRTGLLNLLANATNQKAQVVFKSLLYEAAGRLVNPTHGALGLFWIGQWSRCEATVESVLTGSNINDVTTVDGQTSSGTLIPENHVLPTTSDIRHVARGTNVDIKEKTQFKRAGSIFKPKPRVGWADNATLLKSILENGSLKIVEASSMIEKELNGAAETQVNFELTLGFNCQSSNDKKSYDN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3970 227 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tpr6g3970 227 PANTHER LOB DOMAIN PROTEIN 1 225 - -
Tpr6g3970 227 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Tpr6g3970 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3970 Tpr-Chr6 44961324 44962621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3970 1 142 AS2 family AT1G68510 52.113 8.82e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr6g3970 LOB 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3970 - - mtr:MTR_1g110840 325.479