Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3961 ATGGCAGAAGCTTCGACGAGAAAGGCGAAAAGAAAGAACCGAACCCTTAAAACTCAGGACCTTGAACTCGACCGTTTCGACTCACTTCCATGGAACTCTTCTCTTCCTCAACCCACTGAAAACGATGACAACTCGTTTTCACTCTTTACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTGGAGGAGATTGATGAAGCTGAGTATGGTTTAGATATTCCCGATCCTGAAAATCATGACAGAAAGCACAATTCTAAACAGGACAAGAAGTTGAATAATCAGAAGCAGGACGGTGCTTGTAGTGATGGAGAAACAGTGAAGGATGAGAGCACCAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAAGGATGCAAAAGAAAACCAGAAAGTTCAACATTCAAATACTGGTGCAGCGGCTGATGTGAAGGACACTGCTGGGGAAGAGAACATTGATGAAAATGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTCTTAATGAAAGCAATACACAAACTGGGATTCAAGGAACCAACACCGATACAGAAAGCCTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGTGCTGCAGAGACGGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTTCAACGTCTTTTGGAGGAGCGCGACAAGGCTGCAAATATGGATTCAGAAAAGGGTGAAGAAGCAGAAAAAGTTGCTCCTACGGGCCTTTTGAGGAGTCTTATTATTGCTCCGACCAGAGAACTTGCACTTCAGGTCAAAGATCATCTGGAAAAAGTAGCTAAGCATATTAATGTTAAGGTGACCGCTATAGTTGGTGGTATTTTACCAGAAAAGCAGCAAAGACTTTTAAAAGCAAGGTCTGAGATTGTGGTCGCTACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAACACCTGGTTGAGTTACATTCACTGTCTTTTTTTGTGCTTGACGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCTATAATTGACATGCTTCCCATGTCAAATATCCCTGGTGAAGATAATTCTCAAGATGCACAAAATTGTGTTACAGTTTCTAGCTTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCAGCAACTGTCGCACTGTCCGCTGATTTTCGCAAGAAGTTAAAGCGTGGTTCAATGCAGAAAAAGCAACCATCAACAGATAGTTTGGATTCTATTGAAAATCTTTCTGAGCGAGCAGGAATGAGACCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCTAAGATTGAAGAGTCCTTTATTGAATGCACAGAAGACAATAAAGATGCCCATTTGTATTATATTCTTACTGTCCACGGTCAAGGCCGGACAATAGTTTTCTGTACGTCGATTGCAGCTTTACGCCATATTTCTTCCATATTGCGCATTCTTGGCACCAATGTTTGGACTCTTCATGCTCAAATGCAACAGAGAGCGCGTTTAAAGGCCATGGACCGCTTTCGCGAAAATGACAACGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGCGTCAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAGGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATAGCTTTCAGCGGTTTCCTTTAGAGAACTCATACATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTTGCTCAGTGGATTTAGTCACTGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCCAGCTCTAAGCAATTGAAGAAATTGCAGATGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCTGGGGCTGGTGTAACACCCCTCTTGCAGGAACAATTGCAACAATTAACAAGGCAAAAACTAAGTGATCGCCAGGGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATCGGTCAAGATTGTGTAGACGCACTTCATGCACTTCGGAGTGCTGGGGAAGAGGTGCGCATGGATATCAAGGATTCAACACGACAGAAAAATACCGTGAATTCAAAAAGAAAAAGAAAAGTGGAGAAAACACGTTTACGTGATCAGCGTAAAAAGCAGAAGAGAAAGCAAAACCAGGAGGACGAGGAAGAATAA 2388 0.4183 MAEASTRKAKRKNRTLKTQDLELDRFDSLPWNSSLPQPTENDDNSFSLFTGSNELEGGFLSLEEIDEAEYGLDIPDPENHDRKHNSKQDKKLNNQKQDGACSDGETVKDESTKSKVKKKKKKKSKDAKENQKVQHSNTGAAADVKDTAGEENIDENEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIFQRLLEERDKAANMDSEKGEEAEKVAPTGLLRSLIIAPTRELALQVKDHLEKVAKHINVKVTAIVGGILPEKQQRLLKARSEIVVATPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNIPGEDNSQDAQNCVTVSSFQRKKRQTLVFSATVALSADFRKKLKRGSMQKKQPSTDSLDSIENLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDNKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGTNVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNACSVDLVTENYDSEEEQVNKCRQKKASSKQLKKLQMELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLTRQKLSDRQGAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTRQKNTVNSKRKRKVEKTRLRDQRKKQKRKQNQEDEEE* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3961 795 Gene3D - 442 685 IPR027417 -
Tpr6g3961 795 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Tpr6g3961 795 Coils Coil 774 795 - -
Tpr6g3961 795 SMART ultradead3 178 421 IPR014001 -
Tpr6g3961 795 CDD DEADc_DDX24 170 435 - -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 753 795 - -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 764 783 - -
Tpr6g3961 795 SMART helicmild6 485 566 IPR001650 -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 1 24 - -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 73 113 - -
Tpr6g3961 795 Coils Coil 642 662 - -
Tpr6g3961 795 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Tpr6g3961 795 Pfam DEAD/DEAH box helicase 183 391 IPR011545 GO:0003676|GO:0005524
Tpr6g3961 795 Gene3D - 109 407 IPR027417 -
Tpr6g3961 795 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 82 714 - -
Tpr6g3961 795 Pfam Helicase conserved C-terminal domain 458 565 IPR001650 -
Tpr6g3961 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 408 IPR014001 -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 30 54 - -
Tpr6g3961 795 MobiDBLite consensus disorder prediction 1 145 - -
Tpr6g3961 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 582 IPR027417 -
Tpr6g3961 795 CDD SF2_C_DEAD 446 575 - -
Tpr6g3961 795 PANTHER RNA HELICASE 82 714 - -
Tpr6g3961 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 613 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3961 Tpr-Chr6 44806751 44817535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3961 149 591 Eukaryotic Initiation Factors Gene Family AT1G72730 26.164 6.17e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3961 K14805 - gmx:100806018 1171.76