Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3958 ATGGAGGAAGAAAATAATGAAATGAAATCATTTAAGGATCTGGGCTTACCTGAGGAATTGGTGGAAGCTTGTGACAATTTGGGCTGGAAGACTCCGCTAAAGATTCAAATAGAAGCAATTCCCCTTGCACTACAAGGAAAAGATGTAATTGGACTTGCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGCTCTTCCTATATTGCATGCACTCTTACAAGCACCACGCCCAAACCATTTCTTTGCTTGTGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTGAACAGTTTGAAGCTTTAGGTTCTGGAATTGGTGTCAAGAGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCATCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTCAGTAAACTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGTGAGCGGAGGACTTTCCTTTTTTCTGCTACGATGACGAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCAACCAAGTATTCTACCGTGGATACACTGAAGCAACAGTATCGCTTCTTGCCAGCAAAACGTAAGGATTGCTACCTCGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACCCGGACATGTGATGCAACTCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAACGGTCATATGAGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAATCTGGGGATTGCAATATTCTCCTTTGTACCGACGTAGCTAGTAGGGGACTGGATATTCCAGCAGTAGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGGGCAGGGCGTTCCGGGGTTGCCATTTCCCTTGTAAACCAATATGAGCTAGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTAGAAGAGCGTGTTAGTGAGGCCAAAAGATTAGCTGCAACGAAAATGAAGGAAAGTGGAGGGAAGAAGAAACGGAGGGGTGAAGGAGATTCGGGAGATGATGAGGATATTGACAAATACTTTGGCCTGAAAGACAGAAAATCGTCGAAGAAGTTTAGAAGAAAATGA 1323 0.4293 MEEENNEMKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLQAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSIKIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKRKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATKMKESGGKKKRRGEGDSGDDEDIDKYFGLKDRKSSKKFRRK* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3958 440 PANTHER RNA HELICASE 2 426 - -
Tpr6g3958 440 Pfam Helicase conserved C-terminal domain 239 345 IPR001650 -
Tpr6g3958 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Tpr6g3958 440 SMART ultradead3 28 228 IPR014001 -
Tpr6g3958 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Tpr6g3958 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Tpr6g3958 440 CDD SF2_C_DEAD 225 354 - -
Tpr6g3958 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Tpr6g3958 440 Gene3D - 1 218 IPR027417 -
Tpr6g3958 440 SMART helicmild6 264 345 IPR001650 -
Tpr6g3958 440 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Tpr6g3958 440 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Tpr6g3958 440 MobiDBLite consensus disorder prediction 397 424 - -
Tpr6g3958 440 Gene3D - 219 391 IPR027417 -
Tpr6g3958 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Tpr6g3958 440 PANTHER BNAC02G41920D PROTEIN 2 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3958 Tpr-Chr6 44779484 44788382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3958 8 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.818 1.59e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3958 K14777 - gmx:100775796 726.472