Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3956 ATGGATTTAAGAGATTTATGGATTGTCTTCTTTATGTTTTTTAGCTTCTTGGTTGTTGCTTTTTGTGGACAAGATGGTTTCTTGAGTCTATCATGTGGTGGAAAAACCAGCTTCAATGATTCATCTAACATTTCATGGTTCCAAGACACTCCTTACATAACAACTGGAAAGACAACCACCATCAATTACAATGATGGTTCATTGTCAACAAATGTCTCGGCTCGGTTCTTCCCCCATTCAAGACGTCGTGCATGCTATCGCATACCGGTGAACAATGCAACTAGTTTGATTCTTGTGAGAGCAAAATTTGTATACAAAAACTATGATGGACTTGGAAAACCACCTACTTTCTATGTTTCTCTTGGAACAGCTATTGCTTCTAAGATAAATCTAGCTAAAAATGATCCATTGATAGAAGAGTTTCTTTGGGAAGTTAACAAGGATACAATTGTGTTTTGTTTGAATTCAATTCCAAATGGTGGTTCTCCTATAATTTCTTTGCTTGAAATTAGACCTCTTCCTAAAGGATCTTACATAAAGGGAAAAGAAGATTTCCCAAATAAATTACTTAGGATGAGTTATAGAATTGATTGTGGACACATCAATGAGTCTATAAGGTTCCCCATGGATCCATATGATAGAATATGGAATGGTGATAGAAGTTTCATACCTTTTCATGCTACAACTGGATTTAAGATTCAGAATAGCTTCAATCAATCCAATATTGTGGAGAAACCACCGGCTGCTGTTCTTCAAACTGGAAGAGTCTTGGCGCGACGAAACATGTTGGCATATAACCTCCCTCTTGAGGGATTAGGGGACTACTACATTATCCTCTATTTTGCTGGAATTCTTCCTGTTTTTCCCTCATTTGATGTATTCATAAATGGAGATCTTGTAAAGTCAAACTATACGATAAAAAAGTCAGAAACCAGTGTTTTATATGTCACGCGAAAGGGTATAAGCACATTGAATATAACACTAAGAAGTATCAAATTCTACCCTCATATCAATGCATTTGAAGTATATAATATGGTTGATATTCCACCAGAAGCCTCCTCAACCACAGTTTCAGCAATGCAGGTTATTCAGCAATCCACCGGATTGGATCTAGAATGGCAAGATGATCCGTGCTCGCCTTTCCCATGGGATCATATACTTTGTGAAGGAAACTTAGTTACATCATTGGCTCTCTCAGACATAAATTTGAGATCAATTAGTCCTACATTTGGTGACTTATTGGACCTTAAAACATTGGATTTGCACAACACATCACTTGCTGGTGAAATCCAGAATTTGGGTAGCTTGCAAAGTCTTGCAAAACTGAACCTTAGTTTCAATCAGCTGACATCCTTTGGTGAAGAGCTGGAAAACTTGATTAACCTGCAAATTTTAGACTTGGAAAATAATAATCTCCAGGGAGTAGTGCCTGATAGCTTGGGAGAGATAGAAAACCTCCACTTACTGAATCTAGAAAACAACAATCTACAGGGTCCACTTCCACAGTCTTTGAACAAAGACACTATAGAGATCAGAACATCTGGAAATTTGTGCCTTACTTTTTCCACAACCGGATGCGGCGATGCATCATCCGATCCTCCAATTGTGGCACCACAACTGATTACAGTTCCCAAAAGGAAGCACCATGGACAAAATCATCTAGCAGTAATACTAGGCACAGTTGGAGGATCTACACTTGCCATTTTCCTGATATGTCTATCAGTATTTCTATACAATGCTAAAATAAGATATGGAGCCTCGCACAAAACTAGGGAAGAAACTGATATGAGGAACTGGGGTGCAGAAAAAGTTTTTACCTACAAAGAAATCAAAGTAGCTACTAACAATTTTAAGGAAATCATAGGAAGAGGAGGTTTTGGATCTGTTTACCTTGGAAGACTTCCAAATGGAAAATCAGTTGCTGTCAAAGTTCGGTTCGATAAATCCCAACTCGGGGTTGATTCTTTTATCAATGAGATTCATCTCTTGTCGAAAATCCGCCATCAAAATCTTGTGACTTTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTGGTTTATGAATACTTACCTGGTGGATCCCTGGCTGATCACCTCTATGGTACAAACAGCCTTAAAGCTCCCTTAAGCTGGATTCGAAGGTTGAAAATTGCTGTCGATGCAGCAAAAGGATTGGATTATTTGCATAATGGAAGTGAACCAAGAATCATACACCGCGATGTCAAGTGTAGTAACATTCTCTTGGACATGGATTTGAATGCTAAGGTTTGTGACTTTGGCCTCTCTAAGCAGGTAACCAAAGAAGATGCAACTCATGTCACAACTGTTGTCAAGGGAACTGCTGGTTATCTAGATCCAGAGTATTACTCCACCCAACAGCTTACTGAGAAAAGTGATGTGTATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGATTCACTCCGGGACTCCTGATTCATTCAACTTGGTTTTATGGGCCAAACCCTATTTGCAGGCAGGTGCATTTGAAGTTGTAGATGAAAGCATACATGGAACTTTTGATCTAGAGAGCATGAAGAAGGCGGCGTTCATTGCTGTGAAGTCATTGGAAAGAGATGCATCACAGAGACCACCTATTTCTGAAGTATTAGCAGAGCTAAAGGAAGCTTATGGTATTCAGCTCAGGTTTCTTGAGTCATGTCAAAATGGTAACTGA 2715 0.3886 MDLRDLWIVFFMFFSFLVVAFCGQDGFLSLSCGGKTSFNDSSNISWFQDTPYITTGKTTTINYNDGSLSTNVSARFFPHSRRRACYRIPVNNATSLILVRAKFVYKNYDGLGKPPTFYVSLGTAIASKINLAKNDPLIEEFLWEVNKDTIVFCLNSIPNGGSPIISLLEIRPLPKGSYIKGKEDFPNKLLRMSYRIDCGHINESIRFPMDPYDRIWNGDRSFIPFHATTGFKIQNSFNQSNIVEKPPAAVLQTGRVLARRNMLAYNLPLEGLGDYYIILYFAGILPVFPSFDVFINGDLVKSNYTIKKSETSVLYVTRKGISTLNITLRSIKFYPHINAFEVYNMVDIPPEASSTTVSAMQVIQQSTGLDLEWQDDPCSPFPWDHILCEGNLVTSLALSDINLRSISPTFGDLLDLKTLDLHNTSLAGEIQNLGSLQSLAKLNLSFNQLTSFGEELENLINLQILDLENNNLQGVVPDSLGEIENLHLLNLENNNLQGPLPQSLNKDTIEIRTSGNLCLTFSTTGCGDASSDPPIVAPQLITVPKRKHHGQNHLAVILGTVGGSTLAIFLICLSVFLYNAKIRYGASHKTREETDMRNWGAEKVFTYKEIKVATNNFKEIIGRGGFGSVYLGRLPNGKSVAVKVRFDKSQLGVDSFINEIHLLSKIRHQNLVTLEGFCHESKHQILVYEYLPGGSLADHLYGTNSLKAPLSWIRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDLNAKVCDFGLSKQVTKEDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHSGTPDSFNLVLWAKPYLQAGAFEVVDESIHGTFDLESMKKAAFIAVKSLERDASQRPPISEVLAELKEAYGIQLRFLESCQNGN* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3956 904 Pfam Malectin-like domain 30 344 IPR024788 -
Tpr6g3956 904 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Tpr6g3956 904 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Tpr6g3956 904 SUPERFAMILY Protein kinase-like (PK-like) 595 886 IPR011009 -
Tpr6g3956 904 Gene3D Transferase(Phosphotransferase) domain 1 691 895 - -
Tpr6g3956 904 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 899 - -
Tpr6g3956 904 Gene3D Ribonuclease Inhibitor 355 527 IPR032675 -
Tpr6g3956 904 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Tpr6g3956 904 Pfam Protein kinase domain 618 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3956 904 Gene3D - 190 346 - -
Tpr6g3956 904 ProSiteProfiles Protein kinase domain profile. 615 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3956 904 SMART LRR_typ_2 436 458 IPR003591 -
Tpr6g3956 904 SMART LRR_typ_2 459 482 IPR003591 -
Tpr6g3956 904 SUPERFAMILY L domain-like 358 506 - -
Tpr6g3956 904 CDD STKc_IRAK 621 888 - -
Tpr6g3956 904 SMART serkin_6 615 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3956 904 Gene3D Phosphorylase Kinase; domain 1 580 690 - -
Tpr6g3956 904 PANTHER OS07G0107800 PROTEIN-RELATED 10 899 - -
Tpr6g3956 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3956 Tpr-Chr6 44767063 44773552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3956 8 899 Receptor kinase-like Gene Family AT5G48740 61.926 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tpr6g3956 Malectin_like 1e-51 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3956 - - aprc:113850446 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3956 6 44767063 44773552 Tpr6g3956 6 44767063 44773552 ECH