Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3928 ATGAGTTGCTTTTCATGTTTCTCATCCCAAGAAAAGAAAGTACCAAAGAGACCTAACAATAATAATGAAAAGAAAATACAAAATCATCCTACACAATCTCCTAAGAAGACATTTCTACCTCAGCCAGAGAATCATTATCAAAAGGCAAGGGCAAGCGCAAGTCCACAAAGAGAACCTAAAATAAATAAAGAGACCAAAAAAGAGAGTAGTAGCAACATTGCTGCACAAACATTCACCTTTAGAGAATTGGCTTCTATCACAAGAAACTTTAGGCAAGAAAATCTAATAGGTGAAGGTGGATTTGGAAGAGTTTATAAAGGAAGACTTGAAAAAACTAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTAATGTTGAGCCTTTTGCATCATCAAAATCTAGTGAATCTAATTGGATATTGTGCCGATGGAGATCAAAGACTATTGGTATATGAGTACATGCCTTTAGGATCCCTTGAGGATCATTTACTAGATCTTGAACCACACCAAAAGCCATTAGATTGGTTTACAAGAATGAAAGTAGCATTGGAAGCTGCAAAAGGATTAGAATATTTGCATGATAAGGCAAATCCACCAGTCATATACCGTGACTTAAAATCATCCAACATCTTATTGGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGATTAGCCAAGTTAGGACCTACAGGTGACAAGTCTCATGTGTCTTCAAGAGTAATGGGGACTTATGGATACTGTGCACCTGAGTATCAAAGAACAGGTCAACTTACTGTTAAATCAGATATATACAGTTTTGGTGTTGTTTTGCTTGAATTGATTACTGGAAGGAGAACTATTGATAACACAAGACATTCAAGAGAGCAAAATCTTGTTACTTGGGCATATCCAGTATTCAGGGATCCACATAGATATCCAGAATTAGCAGATCCAAAACTTGAAGGAAACTTTCCAATGAGATCATTACATCAAGCAGTTGCAGTAGCAGCAATGTGTCTAAATGAAGAACCATCAGTGAGACCATTGATAAGTGATGTTGTAACAGCTCTTAGTTTTCTTGGAATAACACCAATGAGTCAAGATCCAAACCTTTTGTCACCAATTGATATGTCATCACCAACGGATGAAAATGAAGAAAAAAGTGCAACCTTGAGTCTTCTTGACGATGATAGTGCTGTCGTACGCCAAAGAGCTGTCGATGAAGCCATGGAATGGGGTTCAAATTCGAGGAATAAACCAAATTATGACAGTTCTTCATATTTGTAA 1308 0.3708 MSCFSCFSSQEKKVPKRPNNNNEKKIQNHPTQSPKKTFLPQPENHYQKARASASPQREPKINKETKKESSSNIAAQTFTFRELASITRNFRQENLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLEPHQKPLDWFTRMKVALEAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDIYSFGVVLLELITGRRTIDNTRHSREQNLVTWAYPVFRDPHRYPELADPKLEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGITPMSQDPNLLSPIDMSSPTDENEEKSATLSLLDDDSAVVRQRAVDEAMEWGSNSRNKPNYDSSSYL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3928 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Tpr6g3928 435 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Tpr6g3928 435 MobiDBLite consensus disorder prediction 24 40 - -
Tpr6g3928 435 MobiDBLite consensus disorder prediction 1 15 - -
Tpr6g3928 435 SUPERFAMILY Protein kinase-like (PK-like) 76 386 IPR011009 -
Tpr6g3928 435 MobiDBLite consensus disorder prediction 1 70 - -
Tpr6g3928 435 PANTHER OS07G0668900 PROTEIN 1 426 - -
Tpr6g3928 435 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 1 426 - -
Tpr6g3928 435 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3928 435 Pfam Protein kinase domain 91 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3928 435 Gene3D Phosphorylase Kinase; domain 1 60 166 - -
Tpr6g3928 435 CDD STKc_IRAK 96 364 - -
Tpr6g3928 435 Gene3D Transferase(Phosphotransferase) domain 1 167 372 - -
Tpr6g3928 435 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3928 Tpr-Chr6 44550759 44553856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3928 1 424 Glycoside Hydrolase AT3G07070 67.136 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tpr6g3928 Pkinase 5.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3928 - - gmx:100786405 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3928 6 44550759 44553856 Tpr6g3928 6 44550759 44553856 ECH