Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3923 TATCCTCGGCTGATAAATGTTCTTGTTCTTCGTTATGATGGCCCGGATATTTCTAGCTCTTATTGGCCAAAACCTTGGCTGCTAATTTCGCAAACCGGCAGGGCTAGTTTCAATGGTAGCAGAATTGCAATCTTGGACTATTTCGGTAATTTCCTTTCATCAGATAATTTAACTTTTATAACTTCTGATTATGGAACAATTCTACCAAGAAGAATGAAAATGGATCCTGATGGTAATGTTAGAGTATATAGCCGAACTAATGTGTCGCAAAATTGGTATGTTTCCTGGCAAGCAATTTATGGTGCTTGTATAGCTCATGGGATTTGTGGAGATAATAGTACATGTAGTTATAATCCTAAGCATGGAAGAAAATGTTCTTGTATTCCAGGTTATAGAGTCAAGAATCATAGTGATTGGTCTTATGGTTGCGAACCTATGTTCGATTTTACTTGCAATAGAAGCGAGTCTACCTTTTTAGGGATGGTAAATGTTGAGTTTTATGGGTATGACATTCACTATGTTGAAGTTAGTAACTATAGTTCTTGTGAGAAATTATGCTTACAAGATTGTAATTGTAAAGGATTTCAGCACGGTTTTGGATCGGGAAAAGGCTTTTATAAGTGTTATACAAAAACACAATTGAGAAATGGAAGGCATTCGCCATTCTTTGTAGGAACAACATACTTGAGATTGCCTAAAGGTAATAACTTTTCGAAACAAGAAACTTCCACTCCGGGTGACCATATTTGTCAAGTGAAACTTCAAAGAGTTTTCGTTAGTTCAAGCGAGAGTCATTTTGTGAAGTTTTTTTTATGGTTTGTCACTGCGATTGGAGCTTTCGAGGTGGTCTTCATTTTTGTCATTTGGTGCTCCCTATTAAGGACGCACCAAAATACTAATGCAGACCAACAGGGCTACCATCTAGCGGATATTGGGTTCCGAAAATTCAGTTACTTGGAGCTAAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGAGGAGGGGTTGTTTACAAAGGCATATTATCTGATGAAAGACATGCTGCAATAAAGAGACTTTACAATGCTCAACAAGGAGGAGAAGGCGAGTTTCTCGCTGAAGTAGGCATCATTGGAAGGCTTAATCACATGAATTTGATTGAAATGTGGGGATACTGTGCTGAGGGAAAATATAGATTATTGGTTTATGAATACATGGAAAATGGTTCTTTAGCTGACAATTTGTCATCTAATAAACTTGATTGGAGTAAATGGTACAAAATTGCTTTAGCAATAGCAAGAGTTTTAGCATATCTACATGAAGAATGCTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAATATTGGATTAAATTATGTGTTAGTTTACAAAATTGTCCTTCATTAA 1401 0.3669 YPRLINVLVLRYDGPDISSSYWPKPWLLISQTGRASFNGSRIAILDYFGNFLSSDNLTFITSDYGTILPRRMKMDPDGNVRVYSRTNVSQNWYVSWQAIYGACIAHGICGDNSTCSYNPKHGRKCSCIPGYRVKNHSDWSYGCEPMFDFTCNRSESTFLGMVNVEFYGYDIHYVEVSNYSSCEKLCLQDCNCKGFQHGFGSGKGFYKCYTKTQLRNGRHSPFFVGTTYLRLPKGNNFSKQETSTPGDHICQVKLQRVFVSSSESHFVKFFLWFVTAIGAFEVVFIFVIWCSLLRTHQNTNADQQGYHLADIGFRKFSYLELKKATKGFSQEIGRGGGGVVYKGILSDERHAAIKRLYNAQQGGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLADNLSSNKLDWSKWYKIALAIARVLAYLHEECLEWILHCDIKPQNIGLNYVLVYKIVLH* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3923 466 Gene3D Phosphorylase Kinase; domain 1 290 401 - -
Tpr6g3923 466 SMART serkin_6 326 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3923 466 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 456 - -
Tpr6g3923 466 Gene3D Hepatocyte Growth Factor 160 226 - -
Tpr6g3923 466 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 456 - -
Tpr6g3923 466 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Tpr6g3923 466 Pfam S-locus glycoprotein domain 65 134 IPR000858 GO:0048544
Tpr6g3923 466 Gene3D Transferase(Phosphotransferase) domain 1 402 464 - -
Tpr6g3923 466 ProSiteProfiles Protein kinase domain profile. 326 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3923 466 ProSiteProfiles PAN/Apple domain profile. 151 227 IPR003609 -
Tpr6g3923 466 Pfam Protein kinase domain 329 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3923 466 SUPERFAMILY Protein kinase-like (PK-like) 304 463 IPR011009 -
Tpr6g3923 466 CDD PAN_AP_plant 152 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3923 Tpr-Chr6 44483960 44485453 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3923 288 464 Receptor kinase-like Gene Family AT3G19300 41.667 4.30e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tpr6g3923 Pkinase 8.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3923 - - gmx:100784287 661.373