Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3910 ATGAAGCCAACTTTGGGTCAAGCTCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGAAAGTTGAACGCCACTGCTAAAACTTTTATGTCAGAAGCAAAAGTTTCGACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTCGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCGAGAACAAATGAGAAACATTCTGAGGCTGCTGCCGCTTACATTGAGCAAACGAAGGCAAGAGAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAACGCAATGTCCAGTTACAGAGAAGAGATCCTAATCATCCTGCACTGAGTGGACTGGGTGGTTCCTTAAATGCCATTAACTCTGAAGGTATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCTATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAAGCATCTCCAAATCTTATCGATGCGAATAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGCTGGTTCATGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAACTGCAAGCACGGTCTACTTTAACCAATGACATCAAAGGAGATGTTAACATTGGCGCTGGTCCAAAGAATTTGCCTTTGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGAAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCGTTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTAACACCACAAAACCAATATCTGTTAGCATCACAACAACAACAGGTCTTGGCGCAGGCTCAGGCACAAAACAGCCTTGGAAATTCTAATTATGGTGATATGGATCCGCGTAGACTTTCTGGTCTTCCCCGAGGTAGCTTAAATGTGAAGGATGGTCAATCTAACAGGAACGATGGAACTATTTCCTCCCAAATGCAATCAGGTTCACCTAAGATGAAGATGACCCAGTCACAACAATCGTTATCTCAGCAGCAAGAGCAATTGCAGCAGAATCAACTTCAGCAGAGTAACAGAAAACGAAAGCAAGCTACTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCGCCATCAACACACACCCCCGGTGATGGATTAAATACAGCTAGCAGCATGCAAAATGTTAACAGTGTGCCAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCTTCAAATTTACTTGACGATATGGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAGTCCTTTCTATCAAATGATGCAGGAGATGGTGCCAATCTCTATGGAACAATAAAACAAAGTCCGGCTGAGCAACCAAAAGAGCCTCCGAGAACTTTCACATTTGCTGAATTTAGTTGCATAAGAACAAGGAACAATGTTACTTCCTGTCACTTCTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGGGAGGACAAGAAGGTTGTCCTGTGGAATATGGACACTTTACGGACAGAGACCACTCCTGAAGAACACAAATTAGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGCGGGCACACTTCAGCTATTATGTCCCTTGATTTTCACCCTAAGAAGACTGATATTTTCTGCTTTTGCGATAGTGAAAATGAGATTCGGTATTATCACATTGCTTCACCCTCTTGTACCCGTGTATCTAAGGGAGGTAGTGCTAAGGTGAGGTTTCAGCCTAGATCGGGACAGTTTCTTGCAGCAGCTTCTGATAAAGTAGTGTCCATTTTTGATGTCGAAACTGACCGACAAGTTTACTCACTCCAGGGTCATCCTGAACCAGTGAACTATATTTGCTGGGATGGTACTGGAGAGATGTTGGCATCTGTTAGTCCAAATTTGGTGAAGGTATGGAATTTGACCTCAGGAGAATGCATTCAGGAGCTCAACTCCCCTGGAAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGTTTTCGTCCATAGAGTTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACATGAGAATGTGATTTCTGCTTTGGCCGAGGCTTCTGTCACTGGAATGGTTGCCTCTGCGAGTCGCGACAACTCTGTAAAGTTGTGGAAATAA 2355 0.4285 MKPTLGQAQSNWEADKMLDVYIHDYFLKRKLNATAKTFMSEAKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAAAYIEQTKAREQLQMQQMQLMQQRNVQLQRRDPNHPALSGLGGSLNAINSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPNLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQLQARSTLTNDIKGDVNIGAGPKNLPLDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNSLGNSNYGDMDPRRLSGLPRGSLNVKDGQSNRNDGTISSQMQSGSPKMKMTQSQQSLSQQQEQLQQNQLQQSNRKRKQATSSGAANSTGTGNTAGPSPNSPPSTHTPGDGLNTASSMQNVNSVPKSMMMYGTEATGGLASSSNLLDDMERFGDVGALDDNVESFLSNDAGDGANLYGTIKQSPAEQPKEPPRTFTFAEFSCIRTRNNVTSCHFSSDGKLLASAGEDKKVVLWNMDTLRTETTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHTSAIMSLDFHPKKTDIFCFCDSENEIRYYHIASPSCTRVSKGGSAKVRFQPRSGQFLAAASDKVVSIFDVETDRQVYSLQGHPEPVNYICWDGTGEMLASVSPNLVKVWNLTSGECIQELNSPGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTISAHENVISALAEASVTGMVASASRDNSVKLWK* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Tpr6g3910 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Tpr6g3910 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Tpr6g3910 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Tpr6g3910 784 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 784 - -
Tpr6g3910 784 Gene3D - 498 635 IPR015943 GO:0005515
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Tpr6g3910 784 MobiDBLite consensus disorder prediction 325 409 - -
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Tpr6g3910 784 Gene3D - 636 784 IPR015943 GO:0005515
Tpr6g3910 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Tpr6g3910 784 Pfam WD domain, G-beta repeat 666 701 IPR001680 GO:0005515
Tpr6g3910 784 Pfam WD domain, G-beta repeat 750 784 IPR001680 GO:0005515
Tpr6g3910 784 Pfam WD domain, G-beta repeat 544 577 IPR001680 GO:0005515
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 544 IPR001680 GO:0005515
Tpr6g3910 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Tpr6g3910 784 SMART Lish 14 46 IPR006594 GO:0005515
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Tpr6g3910 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 784 IPR044716 GO:0003714
Tpr6g3910 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Tpr6g3910 784 SUPERFAMILY WD40 repeat-like 505 784 IPR036322 GO:0005515
Tpr6g3910 784 CDD WD40 507 784 - -
Tpr6g3910 784 Pfam LisH 16 42 IPR006594 GO:0005515
Tpr6g3910 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Tpr6g3910 784 MobiDBLite consensus disorder prediction 324 409 - -
Tpr6g3910 784 Coils Coil 352 372 - -
Tpr6g3910 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 500 535 IPR001680 GO:0005515
Tpr6g3910 784 SMART WD40_4 581 621 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3910 Tpr-Chr6 44371501 44379690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3910 583 783 Miscellaneous Gene Families AT5G08390 22.330 2.04e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tpr6g3910 WD40 0.15 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3910 - - gmx:100799686 1175.61