Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr6g3909 | ATGGAGAACACCGCATTAAAAAATCGAAACTTTGACGATGATGATGATGAAGAAGTTCCTGATTCCTTTTGTTGTTGCGTTTGTCTGGATCTATTATACAAGCCGATTGTGCTATCTTGTGGTCACATTTGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGCGAGTCTCAGTGTCCAACATGTAGGCATCAATATTATCACTTCCCAACAGTCTGCCAAACACTTCATTTTTTGCTTCTGAAGATCTATCCCGTTGCTTACAATAGAAGGATCAATCAAACTCTTGAGGAAGAGAATAAATCAGGCTTTTACTCCCCTCAATTTGATCCCGAGACATGTGAGTCACAAGCCAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTACGATAAATTCAGTTTCCACCTCCTTCAATGTCGGAACTTTTGAATGTACGGAGCAACCGGGGTCCACTGCCCATGAAGGAGAACCTGAATTTACTGGGACTCCTGTTGAAGAAAAAGCATTGCCTCAAGGAGAACCTGACGTTACTGGGACTCATGTTGAAGAAAAAGCATTGCCTCAAGATAATCTTGATATACAACATAAATTATCAGTTGCAGATGTGATGTGTACAATGTGCAAGCAACTGCTTTTTCATCCCGTAGTTCTTAATTGTGGCCATGTATACTGTGAAACTTGTGTCTACAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGCACGGCGAAGAGATGCAATTGAACTAAAGGACATCAAAGTGAAACTTGAGAGCCCTCCTTCTAGTTCATTGAATAATGGTAACAAAGGAGAACATAGCGAATGGTCGTCTGATCCTGACTCGAAAGTTCACGTTGGAGTTGGGTGTGACTTTTGCGGGATGTTTCCTATCATTGGAGATAGATATAGATGCAATGACTGCAAGGAAAAAATGGGTTTTGATCTTTGTGCCAATTGCTACGACACCCGCTCCAAACTTCCAGGCCGATTTAATCAACAACACACCTCAGATCACAGTTTCAAGCTTGTACCACCCAACGCTTTTCATAACATAATGTTGAGGCTGGTCACCGGACAGTTAGGACACAATTCTTTCGACCTCGAGACTTTAGGAAACCTAGAATTTACAGCCGAAGCCTCTGAGTTGTTTGATCATGGCGAAGATAACCAGAATGACCCTGAAGCTACAAATTGA | 1290 | 0.4147 | MENTALKNRNFDDDDDEEVPDSFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPTCRHQYYHFPTVCQTLHFLLLKIYPVAYNRRINQTLEEENKSGFYSPQFDPETCESQAKFGHSCSPSSSSTINSVSTSFNVGTFECTEQPGSTAHEGEPEFTGTPVEEKALPQGEPDVTGTHVEEKALPQDNLDIQHKLSVADVMCTMCKQLLFHPVVLNCGHVYCETCVYKLADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPEEYARRRDAIELKDIKVKLESPPSSSLNNGNKGEHSEWSSDPDSKVHVGVGCDFCGMFPIIGDRYRCNDCKEKMGFDLCANCYDTRSKLPGRFNQQHTSDHSFKLVPPNAFHNIMLRLVTGQLGHNSFDLETLGNLEFTAEASELFDHGEDNQNDPEATN* | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr6g3909 | 429 | MobiDBLite | consensus disorder prediction | 290 | 304 | - | - | |
| Tpr6g3909 | 429 | ProSitePatterns | Zinc finger RING-type signature. | 223 | 232 | IPR017907 | - | |
| Tpr6g3909 | 429 | Gene3D | - | 311 | 375 | IPR043145 | - | |
| Tpr6g3909 | 429 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 132 | IPR013083 | - | |
| Tpr6g3909 | 429 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 310 | IPR013083 | - | |
| Tpr6g3909 | 429 | SUPERFAMILY | RING/U-box | 313 | 375 | - | - | |
| Tpr6g3909 | 429 | PANTHER | UNCHARACTERIZED | 8 | 412 | - | - | |
| Tpr6g3909 | 429 | SMART | ring_2 | 25 | 64 | IPR001841 | - | |
| Tpr6g3909 | 429 | SMART | ring_2 | 208 | 245 | IPR001841 | - | |
| Tpr6g3909 | 429 | ProSiteProfiles | Zinc finger RING-type profile. | 208 | 246 | IPR001841 | - | |
| Tpr6g3909 | 429 | CDD | RING-HC | 25 | 64 | - | - | |
| Tpr6g3909 | 429 | SMART | zz_5 | 315 | 364 | IPR000433 | GO:0008270 | |
| Tpr6g3909 | 429 | MobiDBLite | consensus disorder prediction | 290 | 311 | - | - | |
| Tpr6g3909 | 429 | ProSiteProfiles | Zinc finger ZZ-type profile. | 316 | 380 | IPR000433 | GO:0008270 | |
| Tpr6g3909 | 429 | SUPERFAMILY | RING/U-box | 12 | 70 | - | - | |
| Tpr6g3909 | 429 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 8 | 412 | - | - | |
| Tpr6g3909 | 429 | SUPERFAMILY | RING/U-box | 202 | 249 | - | - | |
| Tpr6g3909 | 429 | ProSiteProfiles | Zinc finger RING-type profile. | 25 | 65 | IPR001841 | - | |
| Tpr6g3909 | 429 | Pfam | Zinc finger, ZZ type | 316 | 356 | IPR000433 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr6g3909 | Tpr-Chr6 | 44361523 | 44368508 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr6g3909 | 23 | 67 | C3H Transcription Factor Family | AT2G42030 | 37.778 | 1.07e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr6g3909 | - | - | gmx:100787174 | 654.44 |