Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3904 ATGGGTTCTAAGTCGGATGTCGAGGGACTTTCCAAAAGCAATTTGGAATTATGGAAAGTGAAGATGGAAGCAACTTTAATGTTTGGGATGATGGATAAAACATGGAGTGTTGTTATCTGGTGCCTTGAAGATAGAGAAGAAGATTCATCAGAGAATATGGAAGAAGTTATGATGGATATCGATGAACAACAGATTATACCTGATCCTCTTCCATTTGCTAGAAGCTATCAGCTTGAAGCACTGGAGCAAGCAGTTCGGGAAAATACGATAGTGTACCTGGAAACAGGGTCCGGGAAGACATTGATAGCTACCATGCTTCTCCGAAGCTATACTTGTCACCTTCGGAAACCTTCTCCATACATTGCTGTCTTTTTAGTTCCGAAAATTGTATTGATTACACAGCAAGCTGAAGTCTTGAGAAACCATACTGATTTAAACATCGGAATGTATTGGGGAAACATGGGTCGTGACTGTTGGGACGAAAATATGTGGAAAGAAGAGATGCAGAAACACGAGGTGCTTGTCATGACTCCTGCAATATTGCTTTCTTGCCTGAGGCATAGCTTTATCAAACTGAATATGATAAAGGTTTTAATAATGGATGAATGCCATCATGTTTCGGGTGATCATCCATATGCTTGTATCATGAATGAATTTTATCATCATGAATTAAGATCAGGTACCACTGAGCTTCCTCGAATTTTTGGGATGACCGCATCCCCAGTTAAGTCGAAAGCTGCGAATTCTGAGTCGACCTTATCAGAAAAAGTTTGGGAACTAATGACTCTAATGAATTCAAAGGTTTATACACGTCTAAGTGATGTTGTCATCTCAGAGTCTACCTTAAAATTCCGGTATTATCATAAGAAAAATGTGATTTTCGATTCGCTGTGCAAAGAAGTATCCAAAAAACTCAACGAATTAAAACAACAGCACGAGCTTTCTGTGACAAGTTTGGATTTTACCGCGGATTCTGTCAAATCTGTAAACAAAAAAATTTCAAAGATTTTGAAATCCTCAATATCTTGCTTAGGACTACTTGGTGTTTGGTTCGCTTTGAAGGCTATGGAGACGTCGTTATTTTCCATTGAACCTTTCTCAGCAGGGTATCCCATTGTGAAAAAATTTATTTCGGCTAGTACCTTGACACTGCAAAGTTACATACCATCTGATCCTCAATGGACTATTGGCGAAAATATGAATTCCGACATGGAAATGGGGCTAATGACTTCGAAAGTGTCCTGTCTTATTGACTGTCTACTTGAGTACAGGGGTGTTACTGAAATGCGATGCATAGTTTTTGTCGAAAGGGTTATTGCAGCTAGGGTTCTTGAGATTCTATTGAACATTTTGCTTCCGAAATACAATAGCTGGAAGGTTAGACATATTGCTGGAAACCGTAGTGTATCGAAAACCCATACTAGGAAAGTTCAAGATGAAATTGTGGAAGAATTTCGCAAGGGATTGGTGAACATCATTGTTGCGACATCAGTTCTCGAGGAGGGTTTAGATATTCAAAGTTGCAATTTGGTTATTAGATTTGACCTACCTAAAACCGTGTGCAGTTTTGTACAGTCCCGAGGCCGTGCTAGAATGCAAAATTCAGATTACATATTGATGTTAGAGAGCGGCGATTTAGCTTCACATGCTCGAATAGAAAAATACATTGCTAGTGAGGAAATGATGAGGAAAGAGTCTTTGCATTATTCTTCCCTTCCATTTGAGAGTGTTGAAAATGATCGACTTGGTGAGCATGCTTATCGTGTTGCTAGCACTGGAGCTGTTGTTAATCTTAGTTCGAGCATTAGTTTGATACACTTATATTGTGCACGGCTCCCTTCAGATGGGTACTTTAAACCAAATCCGAGGTGGGATAAACAAGAAGGAATATTGTATCTTCCTAAGAGTTGTCCTCTAGAGGCTATTCATGTACAAGGTGACCCAAAGTTCTTAAAGAATATTGCATGCCTTGAAGCATGCAAACAACTTCATAAGATTGGAGCTTTGACGGATAATCTCGTTCCTTCTATTCTCGTTGAAGAAGCAGAGGCGGAGGAATTTGTGAATGAACCGTACGATGAGGAACAGCCGAGTTATGTACCATCTGAATTGGTCAATCGTGTGTCGAACAATAGTAACACAAAGTACTATTGTTATTTGATGGAGCTAAAACAAGATTTTAGCTATGGTATCACTGTGCAAGACGTCTTTCTTGCAACTAGAGTCAAGCTTGACCCTGAAATCGGATGCATGCAATTCAATATGTGTTTCGATAGAGGTAACTTGCATGTAAACTTCAAATACAACGGAAGCATTAACCTCTCACAAAATCAGGTTCTTTTTTGTAAAACATTTCAAGTTAATATCCTCGGAATTCTTATGAATTCTAAAATCGATAAGGAATCAAATCTAGGAAAATCTTGTTTGGAAGATGATCTTCAAATGGATTATCTTCTACTCCCATCTACTGTAATAGATGATAAATTAGTTGTTGATTGGTCAACAATTTGTTCGATAGATCCATATAACCTCCGGTGTCTGCAAAACGAAGCCCATATATGGACTACAGAGAGTTCAGTTTGCCGTTGCAAATTGCAGAATGCTTTGATTTGTACGCCACATAATGGCCGTACGTACATCACCACTGATATATTGGATTTGGATGGAAACTCAACTCTAGAAGTAGGGAATGGTCAACGTACTACGTACAAGAAGTACTATGGACAGAAGTATGGCATTCAATTACATTTTGAACATCAACGCCTACTTAAAGCAAGACAAGTTTTTGCTGTAAAAAATTATTCTCATGGCCGCAGAGAAGCGAAAGACAGAGGTTTAAATATGAGCAAGAAGGCCTTTGTGGAATTACCTCCTGAACTATGCTCTATAATCATGTCTCCGATTTCTGTTAGCACAGTTTATTTGTTTTCATTTATTCCATCTATCATGCATCGAGTTGAGTCATTGCTTGGAGCTTTCAACTTCATGAAGATGTATTTGGTTCATTGTACCCACAACAGGATTCCAATATTCAAGGTCTTGGAAGCAATGACTGCAAAGTCATGCAATGAGACCTTCCACTACGAATCGCTAGAAACACTTGGCGATTCTTTTTTGAAATATGCTGTTAGTCAACAGCTTTTTCATATGTATGAAAATCTGCATGAGGGTCTTCTTAGTGTGAAGAGGGAGAAGATCATTTCTAATGCTTCCCTTTGTAAGTTAGGTTGCGGTTCTGGACTTGCGGGCTTCATACGGACTGAATCGTTTGATCATAAGAACTGGATCATTCCTGGAGCTAAACCAAGGGGTTTTAAATTAGAAGTGATTTCTAACAAGGGAGCACAAGTTTATACCCGAGAAACTCGAAAACTGAAAAGAAAAGTTGTTGCTGATGTGGTTGAAGCACTGATCGGTGCCTTCCTCAGCGCTGGTGGTGAGATGTCTGCCTTGATGTTTATGGATTGGGTGGGAATCAAAGTTAATTTTAAATTTTCACCGTATGAGAGGCAATGGAATGCTATTCCCGAGAATGTTCTTAATGTCGCTTTCTTACAATCCATATTGAACTACTCCTTTAAGGACCGTTCTCTGTTAGTAGAAGCTATGACTCATGCTTCATACATGCTGCCCGAGGTTCCCAGATGCTATCAGCGTTTGGAATATTTAGGGGACGCAGTGTTGGATTATCTTATCACAGTGCATCTGTACAAAGAATACCCCGGCATGTCACCCGGGATGTTAACAGACATGAGGGCGGCCTCTGTCAACAATGACTGTTACGCGAGGTCTGCCATAAGGGTTCAATTGCATAAACATGTACTCCATACCTCGCAGGAGTTACATAAACATATTGCAGAGACACTTAGTAAATACAACGAACTATCTTCATCGTCAACTTTTGGATGGGAGTCCGAGGCTTCATTCCCCAAGGTACTTGGCGACATCATAGAGTCTCTAGCTGGTGCTATACTTGTGGATTCAGGATACAAGAAAGAGGTTGTGTGGCAATGCATAAGGCCACTTTTGGAACCACTTGTGACACCTGAAACATTAACGATCCATCCCGTTCGAGAATTAGTCGAACTGTGCCAAACAATGAATTATAGCATGGAGAAGAGATTGTCCTGTAAAGATGGCGTTACTACTTGTGGAATCAATATAACTGTGGATGGAGTAATTCATCAATATGAGTACATAGGTTCTACTGATAAAAAAACAGCCACAAGAATAGCATGCAAGAGAGCTTTGAATTCCTTGAAGTTGAAGGAAACACAAGACAAGTGA 4287 0.3963 MGSKSDVEGLSKSNLELWKVKMEATLMFGMMDKTWSVVIWCLEDREEDSSENMEEVMMDIDEQQIIPDPLPFARSYQLEALEQAVRENTIVYLETGSGKTLIATMLLRSYTCHLRKPSPYIAVFLVPKIVLITQQAEVLRNHTDLNIGMYWGNMGRDCWDENMWKEEMQKHEVLVMTPAILLSCLRHSFIKLNMIKVLIMDECHHVSGDHPYACIMNEFYHHELRSGTTELPRIFGMTASPVKSKAANSESTLSEKVWELMTLMNSKVYTRLSDVVISESTLKFRYYHKKNVIFDSLCKEVSKKLNELKQQHELSVTSLDFTADSVKSVNKKISKILKSSISCLGLLGVWFALKAMETSLFSIEPFSAGYPIVKKFISASTLTLQSYIPSDPQWTIGENMNSDMEMGLMTSKVSCLIDCLLEYRGVTEMRCIVFVERVIAARVLEILLNILLPKYNSWKVRHIAGNRSVSKTHTRKVQDEIVEEFRKGLVNIIVATSVLEEGLDIQSCNLVIRFDLPKTVCSFVQSRGRARMQNSDYILMLESGDLASHARIEKYIASEEMMRKESLHYSSLPFESVENDRLGEHAYRVASTGAVVNLSSSISLIHLYCARLPSDGYFKPNPRWDKQEGILYLPKSCPLEAIHVQGDPKFLKNIACLEACKQLHKIGALTDNLVPSILVEEAEAEEFVNEPYDEEQPSYVPSELVNRVSNNSNTKYYCYLMELKQDFSYGITVQDVFLATRVKLDPEIGCMQFNMCFDRGNLHVNFKYNGSINLSQNQVLFCKTFQVNILGILMNSKIDKESNLGKSCLEDDLQMDYLLLPSTVIDDKLVVDWSTICSIDPYNLRCLQNEAHIWTTESSVCRCKLQNALICTPHNGRTYITTDILDLDGNSTLEVGNGQRTTYKKYYGQKYGIQLHFEHQRLLKARQVFAVKNYSHGRREAKDRGLNMSKKAFVELPPELCSIIMSPISVSTVYLFSFIPSIMHRVESLLGAFNFMKMYLVHCTHNRIPIFKVLEAMTAKSCNETFHYESLETLGDSFLKYAVSQQLFHMYENLHEGLLSVKREKIISNASLCKLGCGSGLAGFIRTESFDHKNWIIPGAKPRGFKLEVISNKGAQVYTRETRKLKRKVVADVVEALIGAFLSAGGEMSALMFMDWVGIKVNFKFSPYERQWNAIPENVLNVAFLQSILNYSFKDRSLLVEAMTHASYMLPEVPRCYQRLEYLGDAVLDYLITVHLYKEYPGMSPGMLTDMRAASVNNDCYARSAIRVQLHKHVLHTSQELHKHIAETLSKYNELSSSSTFGWESEASFPKVLGDIIESLAGAILVDSGYKKEVVWQCIRPLLEPLVTPETLTIHPVRELVELCQTMNYSMEKRLSCKDGVTTCGINITVDGVIHQYEYIGSTDKKTATRIACKRALNSLKLKETQDK* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3904 1428 Pfam PAZ domain 850 987 IPR003100 GO:0005515
Tpr6g3904 1428 SMART helicmild6 442 533 IPR001650 -
Tpr6g3904 1428 SUPERFAMILY RNase III domain-like 1182 1351 IPR036389 GO:0004525|GO:0006396
Tpr6g3904 1428 PANTHER DICER-RELATED 676 1418 - -
Tpr6g3904 1428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 80 259 IPR014001 -
Tpr6g3904 1428 SUPERFAMILY RNase III domain-like 1010 1164 IPR036389 GO:0004525|GO:0006396
Tpr6g3904 1428 ProSitePatterns Ribonuclease III family signature. 1218 1226 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 CDD SF2_C_dicer 411 541 - -
Tpr6g3904 1428 Gene3D Ribonuclease III domain 1010 1156 IPR036389 GO:0004525|GO:0006396
Tpr6g3904 1428 PANTHER - 676 1418 - -
Tpr6g3904 1428 Pfam Helicase conserved C-terminal domain 412 531 IPR001650 -
Tpr6g3904 1428 Gene3D paz domain 845 967 - -
Tpr6g3904 1428 ProSiteProfiles Ribonuclease III family domain profile. 1015 1146 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 Gene3D - 72 312 IPR027417 -
Tpr6g3904 1428 Gene3D - 404 568 IPR027417 -
Tpr6g3904 1428 ProSiteProfiles Ribonuclease III family domain profile. 1182 1329 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 Gene3D Dicer dimerisation domain 596 684 IPR038248 -
Tpr6g3904 1428 SMART PAZ_2_a_3 841 991 IPR003100 GO:0005515
Tpr6g3904 1428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 578 IPR001650 -
Tpr6g3904 1428 SMART ultradead3 69 278 IPR014001 -
Tpr6g3904 1428 CDD RIBOc 1197 1352 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 Pfam DEAD/DEAH box helicase 75 224 IPR011545 GO:0003676|GO:0005524
Tpr6g3904 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 552 IPR027417 -
Tpr6g3904 1428 SUPERFAMILY dsRNA-binding domain-like 1311 1422 - -
Tpr6g3904 1428 CDD DEXHc_dicer 73 270 - -
Tpr6g3904 1428 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 601 683 IPR005034 GO:0016891
Tpr6g3904 1428 SMART riboneu5 1197 1352 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 SMART riboneu5 1011 1166 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 CDD RIBOc 1014 1156 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 Pfam Dicer dimerisation domain 601 675 - -
Tpr6g3904 1428 Gene3D Ribonuclease III domain 1179 1353 IPR036389 GO:0004525|GO:0006396
Tpr6g3904 1428 ProSiteProfiles PAZ domain profile. 864 965 IPR003100 GO:0005515
Tpr6g3904 1428 SUPERFAMILY PAZ domain 862 963 IPR036085 GO:0005515
Tpr6g3904 1428 Pfam Ribonuclease III domain 1218 1329 IPR000999 GO:0004525|GO:0006396
Tpr6g3904 1428 Pfam Ribonuclease III domain 1029 1144 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3904 Tpr-Chr6 44300932 44316928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3904 466 530 Eukaryotic Initiation Factors Gene Family AT1G72730 35.294 5.19e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3904 K11592 - gmx:100792448 1754.57