Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3903 ATGGTTTGTGGAGAAACATTCAAAGATATTGTTGGAAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGGAAATATGGACCAGAAGTAGACATTTGGAGTGTTGGTGTCATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCCTCCATTTCACCTCAAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCTAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCTGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAAGCAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTACGACGAGTTCATCACAGCAACAATGGCCATGAACCGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAGTATAACATGCATGATGGCAGAGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGTGTTCGATGATCCCACGTCATTAACCGAGGAGGAGATGTATGAATTGCGAAACAACTGGGCTACTTGTTTTCTTGACCTGTACAATCACTAG 912 0.4101 MVCGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPQAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEAEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNVFDDPTSLTEEEMYELRNNWATCFLDLYNH* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3903 303 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 4 273 - -
Tpr6g3903 303 Pfam Protein kinase domain 6 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3903 303 ProSitePatterns EF-hand calcium-binding domain. 235 247 IPR018247 -
Tpr6g3903 303 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Tpr6g3903 303 Pfam EF-hand domain pair 155 215 IPR002048 GO:0005509
Tpr6g3903 303 Gene3D - 148 216 - -
Tpr6g3903 303 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 273 - -
Tpr6g3903 303 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3903 303 Coils Coil 172 192 - -
Tpr6g3903 303 Gene3D Transferase(Phosphotransferase) domain 1 4 111 - -
Tpr6g3903 303 Pfam EF-hand domain 228 252 IPR002048 GO:0005509
Tpr6g3903 303 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Tpr6g3903 303 SUPERFAMILY EF-hand 147 273 IPR011992 -
Tpr6g3903 303 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Tpr6g3903 303 Gene3D - 125 273 - -
Tpr6g3903 303 ProSiteProfiles EF-hand calcium-binding domain profile. 222 257 IPR002048 GO:0005509
Tpr6g3903 303 SUPERFAMILY Protein kinase-like (PK-like) 6 134 IPR011009 -
Tpr6g3903 303 SMART efh_1 226 254 IPR002048 GO:0005509
Tpr6g3903 303 SMART efh_1 190 218 IPR002048 GO:0005509
Tpr6g3903 303 SMART efh_1 154 182 IPR002048 GO:0005509
Tpr6g3903 303 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Tpr6g3903 303 SMART serkin_6 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3903 Tpr-Chr6 44296218 44298281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3903 4 273 EF-hand Containing Proteins AT5G12180 87.037 9.31e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr6g3903 Pkinase 4.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3903 K13412 - gmx:100819061 516.153