Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3902 ATGTCAGGAGAAACATTCAAAGATATTGTTGGAAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGGAAATATGGACCAGAAGTAGACATTTGGAGTGTTGGTGTCATGTTATACATTCTTCTATGTGGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACGTTGACTTTTCGAGCGATCCATGGCCCTCCATTTCACCTCAAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCTAAGCAGAGGCTAACAGCATATGAAGTTTTGAATCATCCTTGGATCAAGGAAGATGGAGAAGCACCAGATACACCTCTTGATAATGCTGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTTATTGCTGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGAACTAAACTGTCTGAAGCAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGTAATGGAATCATAGACTACGACGAGTTCATCACAGCAACAATGGCCATGAACCGAATGAACAGAGAAGAACATGTTTACACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAGTATAACATGCATGATGGCAGAGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGTGTTCGATGATCCCACGTCATTAACCGAGGAGGAGATGTATGAATTGCGAAACAACTGGGCTACTTGTTTTCTTGACCTGTACAATCCCGAGGTAGATTATGTTGTTTCCGATGATGAGGTTTAG 942 0.4108 MSGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHVDFSSDPWPSISPQAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLSEAEVKQLMEAADADGNGIIDYDEFITATMAMNRMNREEHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNVFDDPTSLTEEEMYELRNNWATCFLDLYNPEVDYVVSDDEV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3902 313 ProSiteProfiles EF-hand calcium-binding domain profile. 185 220 IPR002048 GO:0005509
Tpr6g3902 313 Pfam EF-hand domain pair 154 214 IPR002048 GO:0005509
Tpr6g3902 313 Pfam EF-hand domain 227 251 IPR002048 GO:0005509
Tpr6g3902 313 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Tpr6g3902 313 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 2 272 - -
Tpr6g3902 313 SMART efh_1 189 217 IPR002048 GO:0005509
Tpr6g3902 313 SMART efh_1 153 181 IPR002048 GO:0005509
Tpr6g3902 313 SMART efh_1 225 253 IPR002048 GO:0005509
Tpr6g3902 313 Gene3D - 147 215 - -
Tpr6g3902 313 Gene3D Transferase(Phosphotransferase) domain 1 2 110 - -
Tpr6g3902 313 Coils Coil 171 191 - -
Tpr6g3902 313 Pfam Protein kinase domain 4 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3902 313 Gene3D - 124 272 - -
Tpr6g3902 313 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Tpr6g3902 313 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3902 313 ProSitePatterns EF-hand calcium-binding domain. 234 246 IPR018247 -
Tpr6g3902 313 ProSiteProfiles EF-hand calcium-binding domain profile. 221 256 IPR002048 GO:0005509
Tpr6g3902 313 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 272 - -
Tpr6g3902 313 ProSitePatterns EF-hand calcium-binding domain. 198 210 IPR018247 -
Tpr6g3902 313 SUPERFAMILY Protein kinase-like (PK-like) 5 133 IPR011009 -
Tpr6g3902 313 SUPERFAMILY EF-hand 146 272 IPR011992 -
Tpr6g3902 313 SMART serkin_6 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3902 Tpr-Chr6 44293045 44295971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3902 3 272 EF-hand Containing Proteins AT5G12180 87.037 9.76e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr6g3902 Pkinase 3.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3902 K13412 - gmx:100819061 516.153