Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3900 ATGGTGTCCGGATCGGGAGTGTGCGCAAAGAGAGTGGTGGTGGACGCTCGTCACCACATGCTCGGTCGTCTTGCCTCGATTGTAGCAAAGGAGCTTCTGAATGGTCAAAAGGTTGTTCTTGTTAGATGTGAAGAAATTGCAGTCTCCGGTGGACTCGTTAGACAGAAGATGAAGTATATGCGTTTCCGTCGTAAGCGTATGAACACTCAACCTTCTCATGGTCCTATTCATTTCCGTGCTCCTTCCAAGATCTTTTGGCGCACTGTTCGTGGAATGATTCCACACAAGACAAAGCGTGGAGAAGCTGCACTTGCCAGATTGAAGGTTTACGAGGGAATTCCTCCTCCATATGATAAGATCAAGAGGATGGTTGTTCCTGATGCTCTTAAGGTGTTGAGGCTTCAAAAGGGACACAAATACTGCTTGCTTGGTCAATTGTCATCAGAGGTTGGATGGAACTACTATGACACCATCAAGGAGCTGGAGAAGAAGAGGAAGGAACGTGCACATTTGGCTTATGAGAAGAAGAAGCTGCTCAATAAGTTGAGGGCTAAAGCCGAGAAGAATGTAGACGAGAGGCTTGCTCCACAACTCGAAATCCTTGCTCCCGTTAAATACTAA 621 0.467 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEIAVSGGLVRQKMKYMRFRRKRMNTQPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERAHLAYEKKKLLNKLRAKAEKNVDERLAPQLEILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3900 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 1 206 - -
Tpr6g3900 206 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Tpr6g3900 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 Coils Coil 161 181 - -
Tpr6g3900 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tpr6g3900 206 Gene3D - 156 206 - -
Tpr6g3900 206 PANTHER RIBOSOMAL PROTEIN L13 1 206 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3900 Tpr-Chr6 44276454 44278171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3900 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 86.408 6.50e-134 372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3900 6 44276454 44278171 Tpr6g3900 6 44276454 44278171 ECH