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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Tpr6g3900
ATGGTGTCCGGATCGGGAGTGTGCGCAAAGAGAGTGGTGGTGGACGCTCGTCACCACATGCTCGGTCGTCTTGCCTCGATTGTAGCAAAGGAGCTTCTGAATGGTCAAAAGGTTGTTCTTGTTAGATGTGAAGAAATTGCAGTCTCCGGTGGACTCGTTAGACAGAAGATGAAGTATATGCGTTTCCGTCGTAAGCGTATGAACACTCAACCTTCTCATGGTCCTATTCATTTCCGTGCTCCTTCCAAGATCTTTTGGCGCACTGTTCGTGGAATGATTCCACACAAGACAAAGCGTGGAGAAGCTGCACTTGCCAGATTGAAGGTTTACGAGGGAATTCCTCCTCCATATGATAAGATCAAGAGGATGGTTGTTCCTGATGCTCTTAAGGTGTTGAGGCTTCAAAAGGGACACAAATACTGCTTGCTTGGTCAATTGTCATCAGAGGTTGGATGGAACTACTATGACACCATCAAGGAGCTGGAGAAGAAGAGGAAGGAACGTGCACATTTGGCTTATGAGAAGAAGAAGCTGCTCAATAAGTTGAGGGCTAAAGCCGAGAAGAATGTAGACGAGAGGCTTGCTCCACAACTCGAAATCCTTGCTCCCGTTAAATACTAA
621
0.467
MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEIAVSGGLVRQKMKYMRFRRKRMNTQPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERAHLAYEKKKLLNKLRAKAEKNVDERLAPQLEILAPVKY*
207
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Tpr6g3900
206
Pfam
Ribosomal protein L13
10
115
IPR005822
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
PANTHER
60S RIBOSOMAL PROTEIN L13A-4
1
206
-
-
Tpr6g3900
206
TIGRFAM
L13_A_E: ribosomal protein uL13
12
154
IPR005755
GO:0003735|GO:0006412|GO:0015934
Tpr6g3900
206
ProSitePatterns
Ribosomal protein L13 signature.
89
112
IPR023563
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
SUPERFAMILY
Ribosomal protein L13
12
154
IPR036899
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
CDD
Ribosomal_L13
12
113
IPR005822
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
Gene3D
Ribosomal protein L13
7
154
IPR036899
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
Coils
Coil
161
181
-
-
Tpr6g3900
206
Hamap
50S ribosomal protein L13 [rplM].
11
135
IPR005822
GO:0003735|GO:0005840|GO:0006412
Tpr6g3900
206
Gene3D
-
156
206
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Tpr6g3900
Tpr-Chr6
44276454
44278171
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Tpr6g3900
1
206
Cytoplasmic Ribosomal Protein Gene Family
AT5G48760
86.408
6.50e-134
372
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Tpr6g3900
K02872
-
gmx:100813340
359.377
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Tpr6g3900
6
44276454
44278171
Tpr6g3900
6
44276454
44278171
ECH
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