Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3891 ATGGCTGAAGAGGAACCAAAGGCTCTTAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAACACAGTGAGGCATTGGCGTTGAGAAAAAAGGACCAATTGCAGAAAAAAGATTTCCAGTTGAGGAAGTCCAAGGACTTTATAAAAAAGCCTGAGGATTTTATTCTCGAATATCGCAATAGGGAGGTCGACCTCATTCGAATGAAAAGGAGGGTCAAGAGGAAACGGGGAGAAAAATCAACCCCATGCAACAAGCCCATAATTGTCATTCGTATACAGGGGAAACAAGACATGCATCCTACAACCAGAAAACACTTATTCAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTGAAACCAACTGATGGAGTGATGGCCAAACTGGCGAGAGTTGAACCATACGTTACCTATGGATATCCAAATCTTAAAAACATAAAGGAGCTAATTTACAAGAAGGGACATGCAAAAATAGATAGGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAAGTTTGGTATCGTTTGCATAGAAGACATGGTTCATCAAATTGAAAATGTTGGTCCACACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGAACTGAACAAGCCAGCTGACGGATTGAAAGGATTGAAAAATCGATTCAAGATTGGTGGCGATTCAGGGGACCGTGAGGATCTCATCAATGAGCTCATCAATAAAATGAATTAA 738 0.3957 MAEEEPKALNYIPEVILKKRKHSEALALRKKDQLQKKDFQLRKSKDFIKKPEDFILEYRNREVDLIRMKRRVKRKRGEKSTPCNKPIIVIRIQGKQDMHPTTRKHLFSLGLRRIFSAVFVKPTDGVMAKLARVEPYVTYGYPNLKNIKELIYKKGHAKIDRRKVPLTDNNLIEQELGKFGIVCIEDMVHQIENVGPHFKEVVRFMWPFELNKPADGLKGLKNRFKIGGDSGDREDLINELINKMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3891 245 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Tpr6g3891 245 PANTHER 60S RIBOSOMAL PROTEIN L7 3 245 IPR039699 -
Tpr6g3891 245 CDD Ribosomal_L7_archeal_euk 87 245 IPR035808 -
Tpr6g3891 245 Pfam Ribosomal protein L30p/L7e 88 137 IPR016082 -
Tpr6g3891 245 Gene3D - 87 245 IPR036919 -
Tpr6g3891 245 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 245 - -
Tpr6g3891 245 SUPERFAMILY Ribosomal protein L30p/L7e 88 245 IPR036919 -
Tpr6g3891 245 Pfam Ribosomal L30 N-terminal domain 12 76 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3891 Tpr-Chr6 44213242 44216599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3891 1 245 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.846 1.10e-83 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3891 K02937 - gmx:100306107 359.762