Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3890 ATGGTAGTCATAGAGCACGAGAAACCCGACGATCAAAACTCGAATCAATCCAACGCCACTGCCGCCGTAAACGATGCCTCTGACGGCTTCGAAACCGCCAGTGAAGCCGATCTCGATAGCGACGGCGAAGAAAGTGAAGCTAACGGCCGAGAAGAAGAACAGAAACATCGTGAACAACCGCAGCAGAAGCGGAAGGAGACAGAGGGAGAGCATGGACAAGATGCTTTGATCAATGAAGAGGAATTGAAACAGAAAGCATCGGGCGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATTCAAACCGTGCTGTCTGCTTTTTGAAACTGGGAAACTATGAAAATACAATTAAAGAATGCACAAAAGCGTTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGACATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGAAAAGCCATTCGCCGACTAGAGCCCCTTGCTGCTGTCAAACGGGAAAAAATGAAAGAAGAAATGATTGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 789 0.4322 MVVIEHEKPDDQNSNQSNATAAVNDASDGFETASEADLDSDGEESEANGREEEQKHREQPQQKRKETEGEHGQDALINEEELKQKASGEANEAKVEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICHSNRAVCFLKLGNYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3890 262 SUPERFAMILY TPR-like 88 207 IPR011990 GO:0005515
Tpr6g3890 262 MobiDBLite consensus disorder prediction 48 76 - -
Tpr6g3890 262 MobiDBLite consensus disorder prediction 13 27 - -
Tpr6g3890 262 Coils Coil 76 96 - -
Tpr6g3890 262 SMART tpr_5 165 198 IPR019734 GO:0005515
Tpr6g3890 262 SMART tpr_5 90 123 IPR019734 GO:0005515
Tpr6g3890 262 SMART tpr_5 131 164 IPR019734 GO:0005515
Tpr6g3890 262 Gene3D Tetratricopeptide repeat domain 35 230 IPR011990 GO:0005515
Tpr6g3890 262 ProSiteProfiles TPR repeat profile. 90 123 IPR019734 GO:0005515
Tpr6g3890 262 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 13 261 - -
Tpr6g3890 262 Pfam Tetratricopeptide repeat 133 163 IPR001440 GO:0005515
Tpr6g3890 262 MobiDBLite consensus disorder prediction 32 47 - -
Tpr6g3890 262 ProSiteProfiles TPR repeat profile. 165 198 IPR019734 GO:0005515
Tpr6g3890 262 ProSiteProfiles TPR repeat profile. 131 164 IPR019734 GO:0005515
Tpr6g3890 262 MobiDBLite consensus disorder prediction 1 76 - -
Tpr6g3890 262 Pfam Tetratricopeptide repeat 166 198 IPR013105 -
Tpr6g3890 262 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 13 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3890 Tpr-Chr6 44196139 44200418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3890 90 221 Calmodulin-binding Proteins AT3G25230 40.000 2.72e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3890 K24926 - gmx:100808386 375.555