Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3889 ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCAGCATTCTCGTTATTGCTCTTCTTTTTGCTTTCACCAATGGAATTAATCACAATGAGAATCACAAATCCACTGAATCACGGATTGTGAATGAAGAAGAGAAGTTCAAGATGCAGAGCTTGAAGAATTCATCAATGGCGGAAAGTTCAAGTGATGATATCAACGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGAAACGACTATACGCAATCACACGGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCGTTGGGCCTTCAGGCGAAAGAGGTTAGCTGATTGTGCCATTGGTTTTGGTCGCAATGCAATTGGTGGGCGCGATGGAAGGTACTATGTTGTGACAAACCCTAAAGACGATGACCCTGTGAACCCAAGACCGGGGACTCTTCGTCATGCTGTCATTCAAGACAGACCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACTATTGATGGTCGTGGCGTAAATGTTCATATTGCCTTTGGGGCCTGCATTACTATCCAGTTTATAACCAATGTCATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACAGGGAATGCTATGGTTCGCAGCTCACCTTCCCATTTTGGATGGAGGACTATGGCTGATGGTGATGCCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGATCACAATTCTCTTTCCAATTGTGCTGATGGTCTTGTTGATGCTATTATGGGCTCCACTGCCATTACCATTTCAAATAACTATTTCACCCACCACAATGAGGTTATTCTATTGGGTCACAGTGACTCATATGTCCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTATACTCACTGGGTGATGTATGCCATTGGAGGCAGTGCTCAACCCACAATTAACAGCCAAGGGAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTCGATACAGGGGAAGGCGTATGGAGAGGTTGGAATTGGAGGTCTGAAGGAGACCTTTTACTAAATGGAGCTTTTTTCACTCCATCAGGAGCAGGAGCTGGAGCAAGCTATGCAAGAGCATCAAGTTTGGGTGCTAAATCGTCTTCTTTAGTCGGTACTTTAACCTCAGGTGCCGGTGTTCTTAACTGTCGCAGAGGTACATTGTGTTAA 1350 0.443 MELRFSSQFVFSILVIALLFAFTNGINHNENHKSTESRIVNEEEKFKMQSLKNSSMAESSSDDINEHAVDNPEEIASMVETTIRNHTERRNLNFFSCGTGNPMDDCWRCDKRWAFRRKRLADCAIGFGRNAIGGRDGRYYVVTNPKDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAQPTINSQGNRYLAPQNPFAKEVTKRVDTGEGVWRGWNWRSEGDLLLNGAFFTPSGAGAGASYARASSLGAKSSSLVGTLTSGAGVLNCRRGTLC* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3889 449 Pfam Pectate lyase 184 364 IPR002022 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Tpr6g3889 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Tpr6g3889 449 PANTHER PECTATE LYASE 37 446 - -
Tpr6g3889 449 Gene3D - 100 442 IPR012334 -
Tpr6g3889 449 SMART amb_all 175 372 IPR002022 -
Tpr6g3889 449 PANTHER PECTATE LYASE 18-RELATED 37 446 IPR045032 GO:0030570
Tpr6g3889 449 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3889 Tpr-Chr6 44177762 44183481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3889 31 449 Polysaccharide Lyase AT4G13710 75.644 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3889 K01728 - gmx:100809277 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3889 6 44177762 44183481 Tpr6g3889 6 44177762 44183481 ECH