Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3888 ATGTCTGGTCAGAGAAGAGATTCAATGTTCAAAGAGAAACAGATTAATGATCTTGTGTCAAGGTTACAACTACTATTGCCTCAGCTCAACCAAAGAAACAGCTCAAGGTTCCTAGAAGAAGGGGACTCCGGTAATCCAGAGTTCGGCCGAGATCAATCAACATCCAAGATCTTGCAGGAAACATTAAATCACATTAGGAGGCTGCAGAAAGAGGTGGACGATCTAAGTGAAAGGCTAACACAGTTGATGGATTCTGTGGATATCAATGATAGTGACAGAAGAACTTTAGAGAACTTTTTGCAACATTAA 309 0.4045 MSGQRRDSMFKEKQINDLVSRLQLLLPQLNQRNSSRFLEEGDSGNPEFGRDQSTSKILQETLNHIRRLQKEVDDLSERLTQLMDSVDINDSDRRTLENFLQH* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3888 102 PANTHER DNA BINDING PROTEIN 1 101 - -
Tpr6g3888 102 Gene3D - 4 98 IPR036638 GO:0046983
Tpr6g3888 102 PANTHER DNA BINDING PROTEIN 1 101 IPR044172 -
Tpr6g3888 102 Coils Coil 58 85 - -
Tpr6g3888 102 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 85 IPR036638 GO:0046983
Tpr6g3888 102 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3888 Tpr-Chr6 44171350 44174471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3888 2 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 47.126 2.35e-15 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g3888 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3888 - - gmx:100790746 80.1073