Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3880 ATGTCAATGCAAAGCCAACACCACCATCAAACAATGAACTCACTATCTTACTTCTTCCACCTCCTCATCTTCACGTTCCTCCTCCCTCTTCCCCTCACTTCCTCCAATGAACTCACTACCTTACTTTCATGGACACACTCCCTCCACCCTTTTTCCAATTGGAACACTCTAGACACAAATCCATGCAAATGGTCATTCATAACATGTTCATCACAAAACTTTGTAACTGAAATCAACATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTTCAAACATCTCTTCACTTTCTAATCTTCAAAAACTAGTCATTTCTGGAACTAACCTCACTGGAACTATCCCTTCAGATATTGGTAACTGTCTTGATCTCATAACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTACAACTATTGGTAACCTAAAAAATCTTCAAAACTTAATCTTAAACTCTAACCAGTTAACTGGTTCAATACCTATTGGACTTTGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGACAATGATCTTAGTGGAAACCTTCCTATTGAGTTAGGGAAGCTTTCAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGATATTGTAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTAACTGTTTTAGGGCTTGCAGATACTAAAATTTCAGGTTCAATACCTAATTCATTAGGTAAATTAATCAAGCTTCAAACAATATCTATTTATAGTACTTTAATTTCTGGTAAAATTCCTAATGAAATTGGTAATTGTTCTGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTGAGATTCCTTTTGAGATAGGTAAGCTTATGAAGCTTGAAAAGATTTTACTTTGGCAAAATAGTTTTGTTGGTAGAATACCTGATGAAATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCCGGTGGAATACCTGAGAGTTTAGGGAAACTATCGAATCTTGAAGAGCTTATGTTGAGTAATAATAATGTTTCTGGTTCGATACCAGCTTCGGTTTCGAATTTGACAAATTTGATTCAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCGGTCGAGATTGGAAAGTTGACAAAACTAACGGTTTTTTTCGCATGGCAGAACAAACTTGAAGGTCGAATTCCGTCTGAGTTAGGAGATTGTTTAAGCCTTGAGGCTTTGGATTTGTCTTATAACAAACTTAGTGATAGTTTACCTTCAGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTGTTGATTTCTAATGATATCTCAGGTTTCATTCCTCCTGAGATTGGTAACTGTAGTTCTCTTATTCGACTTCGGCTTTTAGATAATAGAATTAGTGGTAAGATACCAAGAGAAATAGGTTTTCTTAATAGCCTTAGTTTCCTTGATTTGTCTGAAAATCGTCTAAGTGGTTCGGTACCATTAGAGATTGGAAAATGTAAAGAGCTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGATTTGCATGGTTTTTTGTCTTCTCTTACAATGCTAGAGGTTTTAGATGTTTCAATGAATAATTTTTCTGGTGAGGTTCCGATGAGTATTGGTGAATTAACTTCGCTTCTTCGAGTTATTTTAAGCAAAAACTCTTTCTCTGGATTAATTCCTTCAACTCTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGTAACATGTTCTCGGGGAGCATACCGCGAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAATGCATTATCAGGAGTGATTCCAGTTGAGATTTCGGCTCTAAACAAGCTCTCAGTTCTAGACCTTTCGCATAACATGTTTGAAGGTGATTTGACGGCGTTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCATACAACAAATTCACTGGTTATTTACCAGACAACAAGTTGTTTCATCTACTAGCAGCAACGGATTTGGTCGGAAATCAAGGTTTGTGTCCTAACGGTCATGATTCATGTTTCATTGAAAATGCTGCAATGACAAAGATGTTAAACCGTTCTAATTCTAAGAGGTCGGAGTTGATTAAAGTGGCCATTGGTTTGCTAAGTTTCTTATCTGTTGCAATGACAATCTTTGGAGTTGTTACAGTCTTTCGAGCAAGGAAAATCGTTCGAGACGACAATGATTCCGAGATGGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTCAGCTTTTGTGTGGAGCAAATTCTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCGGGGATAGTTTATCGTGCAGAAATGGAAAACGGCGACGTCATTGCTGTAAAAAGACTATGGCCAACAACAACAGCAGCTAGATCCACCGCAAGATACGACCATAGTCAAAGCGACAAGTTAGCAGTTAATGGTGGAGTTCGTGATTCGTTTTCAGCTGAGGTAAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGGCTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTTTACTGCATGAAGGAAATGATAATTGCTTGGATTGGCACATTAGATTCAAGATAATACTAGGATCAGCTCAAGGTTTGGCTTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGAGACATTAAGGCCAACAACATCCTCATAGGCCTTGAATTTGAACCGTACATAGCTGATTTTGGACTCGCAAAACTTGTCGATGATGGAGATTTTGCAAGATCGTCAAGTACACTAGCCGGTTCTTATGGTTATATAGCTCCTGAGTATGGATACATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGCAAGCAACCAATTGATCCGACAATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGAGGAGTTGAAGTGCTAGATGAGAACTTAAGAGCAAGACCAGAATCCGAAATCGAAGAAATGTTGCAGACATTAGGTGTTGCATTGTTATGTGTAACTTCAAGTCCTGATGATAGACCAACAATGAAAGACGTTGTTGCAATGATGAAAGAGATTAAACAAGAAAGAGATGAATGTGTGAAAGTTTTTGATGGAACTTCTAGAAATGATCGACATGAAAGTAATCATAATGAAGAAGAATCGTCGGAAATGATGAAAGATTCATGTCCTACAACAAGCAGCAGCAGCATAAATGTGCAGTTACATTACTCTCCTCAATCCTCATAG 3387 0.3735 MSMQSQHHHQTMNSLSYFFHLLIFTFLLPLPLTSSNELTTLLSWTHSLHPFSNWNTLDTNPCKWSFITCSSQNFVTEINIQNVQLALPFPSNISSLSNLQKLVISGTNLTGTIPSDIGNCLDLITIDLSSNSLVGEIPTTIGNLKNLQNLILNSNQLTGSIPIGLCDCVNLKNLDIFDNDLSGNLPIELGKLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSIPNSLGKLIKLQTISIYSTLISGKIPNEIGNCSELVNLFLYENDLSGEIPFEIGKLMKLEKILLWQNSFVGRIPDEIGNCSSLKILDLSLNYFSGGIPESLGKLSNLEELMLSNNNVSGSIPASVSNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFAWQNKLEGRIPSELGDCLSLEALDLSYNKLSDSLPSGLFKLQNLTKLLLISNDISGFIPPEIGNCSSLIRLRLLDNRISGKIPREIGFLNSLSFLDLSENRLSGSVPLEIGKCKELQMLNLSNNSLSGDLHGFLSSLTMLEVLDVSMNNFSGEVPMSIGELTSLLRVILSKNSFSGLIPSTLGKCSGIQLLDLSSNMFSGSIPRELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDLSHNMFEGDLTAFSGLENLVSLNISYNKFTGYLPDNKLFHLLAATDLVGNQGLCPNGHDSCFIENAAMTKMLNRSNSKRSELIKVAIGLLSFLSVAMTIFGVVTVFRARKIVRDDNDSEMGGGGDSWPWQFTPFQKVSFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAARSTARYDHSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEGNDNCLDWHIRFKIILGSAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDENLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDECVKVFDGTSRNDRHESNHNEEESSEMMKDSCPTTSSSSINVQLHYSPQSS* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3880 1128 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 5 1091 - -
Tpr6g3880 1128 SMART LRR_typ_2 481 505 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 553 576 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 626 648 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 144 168 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 649 674 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 337 361 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 409 433 IPR003591 -
Tpr6g3880 1128 SMART LRR_typ_2 96 120 IPR003591 -
Tpr6g3880 1128 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524
Tpr6g3880 1128 SUPERFAMILY Protein kinase-like (PK-like) 761 1069 IPR011009 -
Tpr6g3880 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1091 - -
Tpr6g3880 1128 Gene3D Ribonuclease Inhibitor 143 223 IPR032675 -
Tpr6g3880 1128 Pfam Protein tyrosine and serine/threonine kinase 785 1067 IPR001245 GO:0004672|GO:0006468
Tpr6g3880 1128 Gene3D Ribonuclease Inhibitor 36 142 IPR032675 -
Tpr6g3880 1128 PRINTS Leucine-rich repeat signature 412 425 - -
Tpr6g3880 1128 PRINTS Leucine-rich repeat signature 481 494 - -
Tpr6g3880 1128 Gene3D Transferase(Phosphotransferase) domain 1 877 1093 - -
Tpr6g3880 1128 MobiDBLite consensus disorder prediction 1106 1128 - -
Tpr6g3880 1128 ProSiteProfiles Protein kinase domain profile. 781 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3880 1128 Gene3D Ribonuclease Inhibitor 329 434 IPR032675 -
Tpr6g3880 1128 Gene3D Ribonuclease Inhibitor 435 697 IPR032675 -
Tpr6g3880 1128 MobiDBLite consensus disorder prediction 1083 1128 - -
Tpr6g3880 1128 Gene3D Ribonuclease Inhibitor 225 328 IPR032675 -
Tpr6g3880 1128 MobiDBLite consensus disorder prediction 1083 1105 - -
Tpr6g3880 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Tpr6g3880 1128 SUPERFAMILY L domain-like 427 687 - -
Tpr6g3880 1128 Gene3D Phosphorylase Kinase; domain 1 766 876 - -
Tpr6g3880 1128 Pfam Leucine rich repeat 291 349 IPR001611 GO:0005515
Tpr6g3880 1128 SUPERFAMILY RNI-like 102 514 - -
Tpr6g3880 1128 SMART serkin_6 781 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3880 Tpr-Chr6 44112175 44116212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3880 40 1074 Receptor kinase-like Gene Family AT5G56040 47.773 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3880 PK_Tyr_Ser-Thr 6.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3880 - - gmx:100815339 1697.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3880 6 44112175 44116212 Tpr6g3880 6 44112175 44116212 ECH