Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3879 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGATGGTTTTGGAAATTTAGAAGTTTCTGAAAGAGATATGTGGTTGAATAATACTACAAATAATCATCATGATCATGATCATGATGATGATGTTATTTTAGGTATGAATATGAATATGAATGATGATGATGCATCTATGTTCTATGTTGATTTTCCACCTTTACCTGATTTTCCATGCATGTCATCATCTTCTTCATCTTCATCATCTTCAGTGCCTCCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTACTTCTTCATCTTCCTCGGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGATGAAGTTCATGGTGAGAAAATCAATAGTACTCAAAATGGTTACATGCATCATCCATTAGATCATCATGGTCAACATGCAACAACTTTATCTTCAACTGCATCTATGGAGATTTCTCAACAACAACAAGATCTTGGTGTTTCTGATAACAATCATGTTGTTGTTGGTGGTGGTGATTGCATGGATGATGATGGTATTATGGATACTTTTGGTTACATGGAACTTTTAGAAGCAAATGACTTTTTTGACCCTGCATCAATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAGTTCAAGTGCAAGATGAGTATCATCATCATCATCAACAAGTTCCAATGATAATGCATGATGATAGTGAAACAAAACTACAAGAACAAGAAAATAATGATGTTTTTGTTTGTGATGTTACAAACAATGAGGAAGAAAATAATTTTCTTCAAGGATGTGTTGATGATGGTGTTGTTAATGATGAGATGAGTAGTGTTTTTTTGGAATGGCTTAAATCAAACAAAGATAGTGTATCAGCAAATGATTTGAGAAATGTGAAGCTTAAGAAATCAACAATTGAAAGTGCTGCTAGTAGATTAGGCGGTGGAAAAGAAGGAATGAAACGATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATTTACAAAACAAAAGACTCAAAGAAGACACAACATTAGCCTCAAATCTTGCTCCTCAAACACAACAATTTCAAGATCCATGTCAAAACCAAAACACAACAAACACTTTCGCACCTGTCGAATCAAACGCTTGTTTTAACCAATGGTTAGATCAAACACAACCTCTCATTGTACCACCGCAACAATTTTCGCAACCAGTGGTTGGAGTTGGATATGTCGGTGATCCTTATAACACAAATGGTTCGGTTTCGAATAACTTTAACCCTTACCAACCTGCTGCTACTAATGAGTATCATCATATGTTGGAATCGAATCAATCATGGGGTGCTTCACAGTTCAATGTTGCATCAAACTACAATCAATCATTTGTTGAAAACAATAACAGCAATATGATTCAACCGCACGGTGTCAGTTTTGGAGGGTATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTTATATCTCATCATCGGCATCAGAATAATAATGATAATCAGAATTTTCAAGGTTCTGATTCGCTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGGTGCCGGTTCTCATGCAAATCCAGCTAATTGGATGTATTGGCAGACTATGCCTGGTGGGGCAGCAGCTTCATTGGCACCTGTTGCTCCGGTTGAGCCGACGCAGCCTCTGGTGGATCGTGACCGCCACACCATGCATACACAGAATTCTCATCAGGGTCGAAATGCATCAGATAAGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTACAAAAAGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCACAATTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAAGGAGATTTCATAGTGATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCAAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATTCAGCAATTCCAGCTGGAAATGCTGCTGTGGATAATAATGGAACGTCATCTTCACCAAAGAGAAAAAAATGA 2358 0.3745 MECGLDLHAKMVNETEQDGFGNLEVSERDMWLNNTTNNHHDHDHDDDVILGMNMNMNDDDASMFYVDFPPLPDFPCMSSSSSSSSSSVPPLKTIACTSTTTTTTSSSSSASSSSAASWAILKSDLDEVHGEKINSTQNGYMHHPLDHHGQHATTLSSTASMEISQQQQDLGVSDNNHVVVGGGDCMDDDGIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQVQVQDEYHHHHQQVPMIMHDDSETKLQEQENNDVFVCDVTNNEEENNFLQGCVDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAASRLGGGKEGMKRLLKLILEWVQTSHLQNKRLKEDTTLASNLAPQTQQFQDPCQNQNTTNTFAPVESNACFNQWLDQTQPLIVPPQQFSQPVVGVGYVGDPYNTNGSVSNNFNPYQPAATNEYHHMLESNQSWGASQFNVASNYNQSFVENNNSNMIQPHGVSFGGYGNQYNSYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFISHHRHQNNNDNQNFQGSDSLARLGSGDSCTNVVGAGSHANPANWMYWQTMPGGAAASLAPVAPVEPTQPLVDRDRHTMHTQNSHQGRNASDKRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPQLEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKNQHGNNSAIPAGNAAVDNNGTSSSPKRKK* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3879 785 MobiDBLite consensus disorder prediction 755 778 - -
Tpr6g3879 785 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 768 - -
Tpr6g3879 785 CDD BfiI_C_EcoRII_N_B3 635 736 - -
Tpr6g3879 785 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 768 IPR044800 GO:0003700
Tpr6g3879 785 Pfam B3 DNA binding domain 638 734 IPR003340 GO:0003677
Tpr6g3879 785 MobiDBLite consensus disorder prediction 740 785 - -
Tpr6g3879 785 SMART B3_2 637 737 IPR003340 GO:0003677
Tpr6g3879 785 SUPERFAMILY DNA-binding pseudobarrel domain 636 733 IPR015300 -
Tpr6g3879 785 ProSiteProfiles B3 DNA-binding domain profile. 637 739 IPR003340 GO:0003677
Tpr6g3879 785 Gene3D - 633 752 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3879 Tpr-Chr6 44093995 44097746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3879 28 772 B3 DNA Binding Superfamily AT3G24650 47.416 8.63e-162 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g3879 B3 1.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3879 - - gmx:100795226 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3879 6 44093995 44097746 Tpr6g3879 6 44093995 44097746 ECH