Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3876 ATGCCAATGGCGCAATCCAAAACTTTCACCGTTCTCCTCCAAAGCCTCATCCACATTGCAACCGAAATCTCTCAAATCACAAACTTCAATCCACTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGATCAATATCCTTGTTCCTCTCTTTCTTCACCTCATCTACGACGTCGTTTATGTCCCTTGCGAAACTCTCGTTTCGCTTCAACTTGCTTTTCTTTCTGCTAAGGATTTTCTTCTCTTTTGCTCTCAATCGAGCCAGCTCTACATGATACTGGAGAGGGAGAAAATTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTGAGATTTCATGTGACAAACTTCATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTCGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCAATATGATCCAGCTTGTCTTGAGCTATATGAGCATCTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAAACTGCTGCATTACGTTTAATCTGTGAGAAACTACAATTTGTGAGTGTGGAAGATATCAAACAAGAGTCAATTGCCCTACATAAAATGATTGTTGATGGACGTGGGGTTTTTGAAAAAAGCGGAGATTTTGAGAACAACAGGCAGGGGTTGTCAATAGTGCTGAAAAAAATTGAAGATTTTTTGTTGAAGGAATCTGAAAATAATGGAGGTGGTTGTTTTGAGAAAACCACGCAGGTGTTGTCGAGTGGGGATTTGCCTCCTCAAATTGAGGAGACATGCGTGAAATTATGTTGTCAGTCACTAGTTGTCCCGGAGGTGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATACGATGGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATCACTCAGCAGATTATTTCCAGCCTCATCCTCATACCCAACCATGCTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAGAACTAGAAGGGTAGGAAATTTCTGGATCTGTAAGGAAACCTCAGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATAAGGAATCTTACTTCCAGTTACATTGAGGATCAGCGTTCTGCAGCAGGAGAGTTCCGTATTCTTGCCAAACACACTGATCGAAATCGAAATTTGATTGGTGAAGCTGGTGCTATACCCCTCCTTGTCGATCTCCTCTACACTCCTGATGTTGGCACCCAGGAGCATGCGGTTACTGCTCTTCTTAATCTATCTATCTACGACGAAAACAAAGAGCGCATCATGGCTTCTGACGCTGTGCCTGGAATCCTTCATGTTCTCAAAAATGGTAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTAAAGCGGATGAGAACAAATTGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTGCTCTCTTCTGTGAAGGAAGTCCAAGAGGAAAGCTCGATGCTGCAACAGCACTATTCAAACTGTGTTTAATCCATGGGAACAAAGGGCGCGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGGTGGGGAGATGAGGGATGGGGCATTGGCAATCATGGCTTTAATAGTTAGCCACCCGGATGCAATAGAAGCATTTAGATCGACGAATGCTATTCCCATTTTGGTGGAATTCATCAACAATGGATCTTTGAAGAACAAAGAAAATGCAACTTCAGTGCTTATGTACCTATGTAGAGGAGATCCATATTACCTGTCGATTGTCGCTTCACTTGGAGTGATCAATCCTCTTTTGGAACTGACAGAAAATGGTTCAGAAAGGGGAATGAGGAAAGCTGCACAGCTTCTCGAGTTGTTAGGAATTGGGAGACCATTGTGA 1953 0.4291 MPMAQSKTFTVLLQSLIHIATEISQITNFNPLIKTQCFDLSRRINILVPLFLHLIYDVVYVPCETLVSLQLAFLSAKDFLLFCSQSSQLYMILEREKIKFKFNDLASRFEQAIIEISCDKLHISEDLKEQVALVTAQFRRAKEQYDPACLELYEHLLPIYNQSCDVNTETAALRLICEKLQFVSVEDIKQESIALHKMIVDGRGVFEKSGDFENNRQGLSIVLKKIEDFLLKESENNGGGCFEKTTQVLSSGDLPPQIEETCVKLCCQSLVVPEVFRCPISLELMKDPVIISTGQTYDGACIKKWLDAGHRTCPITQQIISSLILIPNHALYSLISNWCEANGVEPPRTRRVGNFWICKETSDGSSELINLDTLIRNLTSSYIEDQRSAAGEFRILAKHTDRNRNLIGEAGAIPLLVDLLYTPDVGTQEHAVTALLNLSIYDENKERIMASDAVPGILHVLKNGSMQARENAAATFFSLSKADENKLAIGASGAIKALVALFCEGSPRGKLDAATALFKLCLIHGNKGRAIKAGIVPKLVEMLTEPGGEMRDGALAIMALIVSHPDAIEAFRSTNAIPILVEFINNGSLKNKENATSVLMYLCRGDPYYLSIVASLGVINPLLELTENGSERGMRKAAQLLELLGIGRPL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3876 650 SUPERFAMILY RING/U-box 272 346 - -
Tpr6g3876 650 Gene3D - 11 119 IPR036537 GO:0007166
Tpr6g3876 650 PANTHER U BOX DOMAIN-CONTAINING 10 644 - -
Tpr6g3876 650 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Tpr6g3876 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Tpr6g3876 650 Pfam Armadillo/beta-catenin-like repeat 401 439 IPR000225 GO:0005515
Tpr6g3876 650 SMART arm_5 441 481 IPR000225 GO:0005515
Tpr6g3876 650 SMART arm_5 564 604 IPR000225 GO:0005515
Tpr6g3876 650 SMART arm_5 606 646 IPR000225 GO:0005515
Tpr6g3876 650 SMART arm_5 482 522 IPR000225 GO:0005515
Tpr6g3876 650 SMART arm_5 400 440 IPR000225 GO:0005515
Tpr6g3876 650 CDD RING-Ubox_PUB 276 318 IPR045210 -
Tpr6g3876 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Tpr6g3876 650 SUPERFAMILY ARM repeat 371 644 IPR016024 -
Tpr6g3876 650 Coils Coil 124 144 - -
Tpr6g3876 650 Gene3D - 508 649 IPR011989 -
Tpr6g3876 650 Gene3D - 357 507 IPR011989 -
Tpr6g3876 650 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Tpr6g3876 650 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Tpr6g3876 650 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3876 Tpr-Chr6 44047514 44062069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3876 14 642 U-box Gene Family AT3G46510 47.022 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3876 - - var:108326899 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3876 6 44047514 44062069 Tpr6g3876 6 44047514 44062069 ECH