Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3875 ATGGATTCAACTTTTGATATGTTATGTGATGTTGTTCCTGGAAGGGAATCATGGAGGGTTAAGGTTAGGGTTATTCGTGTGTGGGAAGTTCCTAATTTCTTGAATCCTGACCAGATTAATTCGATTGAAATGGTTTTGATCGATGAGAAGGGTGGGAAAATTCATGCTACAATCAGGAAACAATTGTTGTATCTTTTTAAGAACAAGATTTCGGAGGGTCATGTTTATAAAATTTCTTATTTGGCTGTTGCACCAAGTTCTGGGAGCTATCGAACAACGTTGCATCCATACAAGTTCTTTTTTCAGATGAAGACCAAAATTCAAATCTGTCAAAGTGATGATATACCAAATTTTGGATTGTCAATTAGTAATATATCTGATGTTTGTTCTCATACCATTGATTATGATTTTTTAGTTGATGTCATGGGTATAATGACTGGTATTTCTGTAGAGAGGGAATACATTAAAGATGGAAGAGTTACAAAAATGATAGTTGTGGAGTTGACTGATAAGAGTGGTAAGTGTGAAATTGCATTGTTTGGAGACTATGTTGATATACTCCAGAAGAAAATGGAGAGTAATTCTGAAGGCTTACCAGTTGTAGCTGTTCAATTTGCCAAAGTTAAGATTTTTAGAGATAAAGTTTCGCTGCAAAATGTCATTAATACCACTCAGATTTTCATTAATCCTGATTTCAAAGAGGCTGTGGATTTAAGAAATGGGAATATTAATGTTGGGATTGAACACTCTGGTGTTGTTCCTGTTCTTGGTCCTCGTGGTAAAGCTACTTTGGAGGAAGATTTTTTGCTTGGTTATCAAAAAAGCACAATCTCAAAACTTTTAGGGTCATCTGAGGATGGTATTTTTATTGTTCTGGCTGTAGTTACTGATTTGGTTGATGGGCAAGACTGGTGGTATCCCGCGTGTCGTTGTCACAAAAGTGTGATTGCTGATTCTGGAGCTTATTATTGTAAGGGTTGCGTTAAGCATGTTTTTCATATGGTTCCTAGGTTTAAAGTTAAATTTAATGTTTGTGATGATACTGGTGATACTATCTTTGTTGTCTTTGACACTGATATGTATTCACTAATTGGAAAACAGTGCAGTGATTTGGTGTCTGCTGGAAAGGCTGAAAATGCTGGGTTTTATCCAAGTGAATTGAAGAAATTAATTGGTGCTAAGTTGTTGTTTAAGGTTGAAAAATCTTCCTCAACCAATGTTTTATTCGATGGTTCGTTTAAGGTTAAGCGTGTTTGCAATGATTCATCTATTTTGCAAATTTTCAATTCTCATGTCTCTGGAATTTCTGCTGCTGAGATTGAAACTCAACTAGATGGATTTGTATCTGGTCTTTTGGTTTCTCCTGGATCAGAACTGGCACCTACTAATAAACAATTTGCTGCTGGTTCTGCGAAGAGAGATTTGTCCACTGCTTTTGAAGATGCTGATGTTTCCAATGGTGCTGTTCCAATTAAGTCAGTGAAAATTGAAAAGGAGTAG 1500 0.36 MDSTFDMLCDVVPGRESWRVKVRVIRVWEVPNFLNPDQINSIEMVLIDEKGGKIHATIRKQLLYLFKNKISEGHVYKISYLAVAPSSGSYRTTLHPYKFFFQMKTKIQICQSDDIPNFGLSISNISDVCSHTIDYDFLVDVMGIMTGISVEREYIKDGRVTKMIVVELTDKSGKCEIALFGDYVDILQKKMESNSEGLPVVAVQFAKVKIFRDKVSLQNVINTTQIFINPDFKEAVDLRNGNINVGIEHSGVVPVLGPRGKATLEEDFLLGYQKSTISKLLGSSEDGIFIVLAVVTDLVDGQDWWYPACRCHKSVIADSGAYYCKGCVKHVFHMVPRFKVKFNVCDDTGDTIFVVFDTDMYSLIGKQCSDLVSAGKAENAGFYPSELKKLIGAKLLFKVEKSSSTNVLFDGSFKVKRVCNDSSILQIFNSHVSGISAAEIETQLDGFVSGLLVSPGSELAPTNKQFAAGSAKRDLSTAFEDADVSNGAVPIKSVKIEKE* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3875 499 CDD RPA1_DBD_B_like 140 239 - -
Tpr6g3875 499 SUPERFAMILY Nucleic acid-binding proteins 121 240 IPR012340 -
Tpr6g3875 499 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Tpr6g3875 499 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 375 - -
Tpr6g3875 499 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Tpr6g3875 499 CDD RPA1_DBD_A_like 19 107 - -
Tpr6g3875 499 CDD RPA1_DBD_C 274 418 IPR013955 -
Tpr6g3875 499 Gene3D - 271 421 IPR012340 -
Tpr6g3875 499 Gene3D - 5 110 IPR012340 -
Tpr6g3875 499 Gene3D - 113 246 IPR012340 -
Tpr6g3875 499 SUPERFAMILY Nucleic acid-binding proteins 281 400 IPR012340 -
Tpr6g3875 499 Pfam Replication factor-A C terminal domain 290 400 IPR013955 -
Tpr6g3875 499 PANTHER REPLICATION FACTOR A 1, RFA1 22 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3875 Tpr-Chr6 44028356 44030832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3875 18 371 Core DNA Replication Machinery Family AT4G19130 25.464 4.13e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3875 - - mtr:MTR_8g062030 511.146