Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3871 ATGGCAACAGCAACATACCCACCACCACCACCTTATTATAGACTTTACAAAGATTACTTGGAAAATGATGACTCTGCTCCAAAGCCTCCACTGCCAATTGAAGGAACTTACATTTGTTTTGGTGGAAATTACACTACCAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTATATTCTAAGGGGCCGAATGTTGATTTCAAGAAGGAACTGAGATCACTTAATAGCGAACTCCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGCGGCCATCCCAGTATGCAAGAAGAATCGAAGAAATTTCGACTGTATTCAAAAACCTACATCATCTTTTAAATTCATTGCATCCTCATCAGGCGAGGTCAACACTGATTCACATTATGGAACTTCAGATAAAGCGCCGCAAACAAGCCCTGGAGGACATAAAGAGGAGGAGAGAAGTAGCTCAAAGAATTCTTAACGAGTCCTTAGCAACACTCGATGGTCATTAG 507 0.4181 MATATYPPPPPYYRLYKDYLENDDSAPKPPLPIEGTYICFGGNYTTSDVLPSLEEQGVRQLYSKGPNVDFKKELRSLNSELQLHILELADILIERPSQYARRIEEISTVFKNLHHLLNSLHPHQARSTLIHIMELQIKRRKQALEDIKRRREVAQRILNESLATLDGH* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3871 168 SUPERFAMILY Mediator hinge subcomplex-like 66 159 IPR037212 GO:0016592
Tpr6g3871 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 168 IPR009244 GO:0003712|GO:0006357|GO:0016592
Tpr6g3871 168 Pfam MED7 protein 4 157 IPR009244 GO:0003712|GO:0006357|GO:0016592
Tpr6g3871 168 Gene3D - 60 159 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3871 Tpr-Chr6 43987329 43992048 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Tpr6g3871 Med7 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3871 K15148 - gmx:100792250 287.73