Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3858 ATGCCTCTGTCTCATATATCAAACAACCTTCGCCTTCGCAATCTTTTCATCTTATTCAGAAAAGAATTTACATTCGTCGCATTCGCTTTATTCCTTCTCTTCGCTTTCACTTTTTTCACCCGATCCAATCCACACTCTAACTTTCATGATGAGTCTCACTCCAATTCCATCCTCATTCCATTCACCCCTCTTACCAACTTCAAACAAATTGGCGCACTTTGCTTGGATGGCAGTGCTCCTGGTTACCATTTCCAAAAGGGTTTTGGATCCGGATCTCATAATTGGTTGCTTCACGTTGAGGGAGGAGGGTGGTGCAATTCAATAGCGTCGTGTTCTTATAGAAAAATGACTGCTTTGGGATCATCCAAGTATATGGATACATCGGTTCCTTTTTCAGGGATACTAAGCTCTGTTCCTTCTCAAAATCCTGATTTCTTTAACTGGAACAAGGTGAAGATGCGCTATTGTGATGGTGCATCCTTTGCTGGTCACCCAGAAAGTGAGAAAGGAAGTGGGTTGTTCTTCAGAGGCCAGATCATATGGGAAGCTATTATGAATGAACTATTATCAATTGGAATGTCTAAAGCGAAACAGGCTCTGTTGTCAGGATGCTCTGCTGGAGGATTGGCAACTCTTATACATTGTGATAACTTCCGACAATTACTTCCAAAGGAGGCCACTGTCAAGTGTCTCGCGGATGCAGGCTTCTTCCTTGATGAGAAGGATATTATCGGAAATAGCACAATGAGATCTTTCTATCATGATGTTGTTCAGCTCCAGGGTGTTGAAAAAAGTTTGCACAAAGAGTGCCTTGCTAAATTGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTCTGAAAAATGTAAAGACTCCTGTTTTCCTTGTTCATCCGGCTTATGATTTTTGGCAGATACACAATATTTTGGTACCTCAAGGATCAGATCCCCGTCGTCGCTGGAAAAAATGCAGATTGAACATTCACAGTTGTGATGCTAACCTGATTCGCACACTTGACAGTTTCCGTAGTTCTTTGCTGAAGACTGTGAATGAATTCCAGCAACGGAAGGATATTGGAATGTTTATAGATTCCTGCTTTATCCATTGCCAGACTTGGATGGGAGAGACATGGCATTCACCCACTTCTCCAAAAATCAAGGATAAGACAATTGCTGAATCTGTTGCCGATTGGTTCTTTGATCGACAAGTGGTAAATCTTATCGACTGCCCTTATCCATGTAATCCTACTTGTCATAATATGGATTTCAGCAGAGTATAA 1278 0.4147 MPLSHISNNLRLRNLFILFRKEFTFVAFALFLLFAFTFFTRSNPHSNFHDESHSNSILIPFTPLTNFKQIGALCLDGSAPGYHFQKGFGSGSHNWLLHVEGGGWCNSIASCSYRKMTALGSSKYMDTSVPFSGILSSVPSQNPDFFNWNKVKMRYCDGASFAGHPESEKGSGLFFRGQIIWEAIMNELLSIGMSKAKQALLSGCSAGGLATLIHCDNFRQLLPKEATVKCLADAGFFLDEKDIIGNSTMRSFYHDVVQLQGVEKSLHKECLAKLEPSKCLFPSEILKNVKTPVFLVHPAYDFWQIHNILVPQGSDPRRRWKKCRLNIHSCDANLIRTLDSFRSSLLKTVNEFQQRKDIGMFIDSCFIHCQTWMGETWHSPTSPKIKDKTIAESVADWFFDRQVVNLIDCPYPCNPTCHNMDFSRV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3858 425 Pfam Pectinacetylesterase 54 403 IPR004963 GO:0016787
Tpr6g3858 425 PANTHER PECTIN ACETYLESTERASE 4 22 418 - -
Tpr6g3858 425 PANTHER NOTUM-RELATED 22 418 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3858 Tpr-Chr6 43860666 43866123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3858 26 389 Carbohydrate Esterase AT3G09410 61.475 3.91e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3858 K19882 - gmx:100792819 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3858 6 43860666 43866123 Tpr6g3858 6 43860666 43866123 ECH