Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3857 ATGGGTAATAGAATCAGTAGCCTCTGTCTCTGTTCTGCCGGCGCCGGAGAAATCTCCGGCAGGTTTTATAACAGCTTTGCCTTGTTATCCAAGAATCATGACAAAGCTATTTGCAACTCCATCTCCTATGTGAGACCGAACTCGCCTGGATTCTCCGGCGATACATTCTCGGAAGAGGATGCCGACACCCTAGTGACTTTCCGGTTGGTCTCCGGAGCCACCGTGAGTGCAAATTCCTCATCAACACCTTCCATTTACCTTGATGACTCTCTTCAACATAGCACTGTTTTGGATTCCTCTGCTTCATTTGAAAGCTTTGGTTCATTCACTTCCACAATGATGCATCCTCAAAATCAAAATCAGAATGATCCTCGTAGTTCTTCTGTGTGTGGCTCCATTGAAAAAGGGTTATCTTGGAGCCCTTTTAATCTTGTGTTGAATGATGATGATTCCATTGAAAAATCTTCAGAACATGTCAAGAAGATAAAGAAACCTAACAAGATCAGCTTGCAGAATGTTCTAAGTAGAGTTTTTTCAAAAAAAGTATCTTCTGGAAAAGGATCAATTTTTAAGAATAGAGATAATGTTAATGTTAATGCAAATGCAAGAGTGAGTTGTAGTACTAGTTTAAGTGATGAATTGAGATTGCATAATGAGAACTATATGGATGATGATGGATGTGATGATATGTCAATGGTTTGTGAGAATCTTCATATGGCTCAAGGAAAAGGCGGTGAGGATCGTATGCATATCGTGATTTGTGAGGAACATGGATGGGTTTATGTGGGAATTTATGATGGATTTAATGGTCCTGATGCAACTGATTATCTTCTTAATAATATGTTTTATGCTGTACATGATGAGCTTAAAGGGTTTCTATGTAATCGAAATCGAAATAGTAGTAATAAAGTGAAAAGTGAAGAGGGTTTTAGTCACATAGATGTGTTAGAAGCTCTTTCAGAGGCAATGAGGAAAACTGAGGATGCATTTTTGAAGATAATTAATGAGATGATTAATCATAATCCTGTTTTGGCTATGATGGGTTCTTGTGTTTTGGTTATGTTGATGAAAGGTGAAGATGTTTATTTGATGAATGTTGGTGATAGTCGCGCTGTTTTAGCTACTCGGATTGGGAATCATCCTCAACTCACCATGGATCATAGCACTCATGTGAAAGAGGAGGTTCGTAGAATCAGACAGGAGCATCCAGATGATCCTTCTGCGGTAAAAAAAGGCCGAGTGAAAGGTTACTTGAATATCACAAGGGCTTTTGGAGCAGGATTCCTTAAGCAGCCTAAACAAAATGATGCAATGTTAGAGACTTTCAAAATTAACTACATAGGAGAATCTCCTTATATCACATGCTCCCCTTCATTACACCACCAAAAACTCAGCTCAAGTGACAAATTTCTTATACTGTCTTCTGATGGACTTTACCAATACTTCACAAATGAAGAAGCAGTTGCAAAAGTAGAGTCATTCATCATCATGTTTCCAGATAAAAATCCAGCACAACTTCTCATTGAAGAAGCACTTAGTCAAGCAGCCAAAAAAGCAGGTATGGAGTTCCATGAGTTGCTTGATATACCACAAGGGGAAAGAAGGCTATACCATGATGACATTTCCATTGTCATAATATCCTTGGAGGGAAAAATATGGCGTTCATTGGTGTAA 1674 0.3871 MGNRISSLCLCSAGAGEISGRFYNSFALLSKNHDKAICNSISYVRPNSPGFSGDTFSEEDADTLVTFRLVSGATVSANSSSTPSIYLDDSLQHSTVLDSSASFESFGSFTSTMMHPQNQNQNDPRSSSVCGSIEKGLSWSPFNLVLNDDDSIEKSSEHVKKIKKPNKISLQNVLSRVFSKKVSSGKGSIFKNRDNVNVNANARVSCSTSLSDELRLHNENYMDDDGCDDMSMVCENLHMAQGKGGEDRMHIVICEEHGWVYVGIYDGFNGPDATDYLLNNMFYAVHDELKGFLCNRNRNSSNKVKSEEGFSHIDVLEALSEAMRKTEDAFLKIINEMINHNPVLAMMGSCVLVMLMKGEDVYLMNVGDSRAVLATRIGNHPQLTMDHSTHVKEEVRRIRQEHPDDPSAVKKGRVKGYLNITRAFGAGFLKQPKQNDAMLETFKINYIGESPYITCSPSLHHQKLSSSDKFLILSSDGLYQYFTNEEAVAKVESFIIMFPDKNPAQLLIEEALSQAAKKAGMEFHELLDIPQGERRLYHDDISIVIISLEGKIWRSLV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3857 557 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 292 557 - -
Tpr6g3857 557 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 16 292 - -
Tpr6g3857 557 SUPERFAMILY PP2C-like 243 549 IPR036457 -
Tpr6g3857 557 ProSiteProfiles PPM-type phosphatase domain profile. 230 548 IPR001932 -
Tpr6g3857 557 CDD PP2Cc 226 548 IPR001932 -
Tpr6g3857 557 SMART PP2C_4 230 546 IPR001932 -
Tpr6g3857 557 Pfam Protein phosphatase 2C 287 517 IPR001932 -
Tpr6g3857 557 PANTHER PROTEIN PHOSPHATASE 2C 16 292 IPR015655 GO:0004722|GO:0006470
Tpr6g3857 557 PANTHER PROTEIN PHOSPHATASE 2C 292 557 IPR015655 GO:0004722|GO:0006470
Tpr6g3857 557 Gene3D - 201 554 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3857 Tpr-Chr6 43856464 43859543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3857 1 557 PP2C-type Phosphatase Gene Family AT1G07630 42.815 2.59e-165 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3857 - K01102 gmx:100804061 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3857 6 43856464 43859543 Tpr6g3857 6 43856464 43859543 ECH