Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3851 ATGGAGGTGTATTCAGAGGAGATGTGTTGTTTGGAGAATAAGCAATCGACAGTTGCTTCTTGCTCGTCTTCTGAAGACAGTGGCTGTGGCAGTGCAATTCAAAAGTCGCCTGGGATATGTAGCCCCACGGCTACTTCGACATCGCCCTCACATCGGAGGACGACAGGTCCTATAAGGCGAGCTAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTGAGGAATGCTGTTGCAGCTTTTAAGGGAAAGCATTGGAAGAAAATAGCTGAGTTTTTTAAAGATAGATCCGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCGTGGACACAGGAGGAGGATGACAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAGCAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAACTAGCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAGAAGTTGGATTTTTACTTAGCTACAGGAAAACTTCCCCCAGTTCCAAAAAGCAATCCACTAGTTGCTGCCAAAGATACAATTAAACGTTCTGCTACTAAACCAATACTTGTTTCATCTAATAAAGAATTAAATGTCGCTGTCGACACATCGTCTGAAACCACAGCCATTAGTAAGCCAGATGACAGCGGCAAGAACCAGTTTGAGTCCTCAGGGACAGCTAGAGACGTAGGCGATTCTTCAAGTGTACCGACAAATGAATCTGCTGATTTTGACTGTGTAGAATGCGAGCCGGGACCATCCAATGTTGATCTTGGCTGTGGAAATTCAGAACATATATCAAGAGTCAATTTTGGAACAACTTATGGGCCAAAATCTGAGAATTCTGCACTCAATGGAAACCCAATAACTGAGCATTGTTTAAACAATGGTAAAATGAGCAATAGCGATAGCAGGTTAATCGGGACATCAGCACAAGAAAATCATACTTTTGGTTCTTTGTATTATGAGCCACCACTTTTACCTGGTTCAGTTCCTTTAGATTCTCTTCACTTAAGTATTCTCTCCATGCAGAATGATTACTGTTCTAAGATGTCACCCTTGGGTTACATCACTCCACCTCGCGCGAGGGATAGTGAATTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCTAATACTTATCCAAATACTCCTTCCATATATAGGCGGAGAAGAACTGGAGACCAACCACTTACTTCTCCTAGTAAAGTTTTAAAAGTCCACAATGATTCACATGCTTCTAATGAACCGGATAGAACCAAGAATAATTCTGATTCTGAAGCTCGGACGTTGTCTGACAGTCCTGCAAGCCTTGACAATAAGAGTGTTAATCTCAATAATAAGGCATTCAATGCATCTCCACCATACCGATTAAGAACCAAACGAACAGCAGTTGTCAAGTCTGTGGAGAAACAACTTGAATTTGCGTTTGACAAAGAGAAGAATGATGACAGTATGAACGCAATGGAAAAATCTGCAAAGAGGAGCAATGCTATGACTGAGGATTGTCTTCATGAAAGAAAATTGGTAGTGACGTAG 1722 0.421 MEVYSEEMCCLENKQSTVASCSSSEDSGCGSAIQKSPGICSPTATSTSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFKGKHWKKIAEFFKDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPVPKSNPLVAAKDTIKRSATKPILVSSNKELNVAVDTSSETTAISKPDDSGKNQFESSGTARDVGDSSSVPTNESADFDCVECEPGPSNVDLGCGNSEHISRVNFGTTYGPKSENSALNGNPITEHCLNNGKMSNSDSRLIGTSAQENHTFGSLYYEPPLLPGSVPLDSLHLSILSMQNDYCSKMSPLGYITPPRARDSELCTETPESILRKAANTYPNTPSIYRRRRTGDQPLTSPSKVLKVHNDSHASNEPDRTKNNSDSEARTLSDSPASLDNKSVNLNNKAFNASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDSMNAMEKSAKRSNAMTEDCLHERKLVVT* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3851 573 MobiDBLite consensus disorder prediction 437 509 - -
Tpr6g3851 573 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 215 IPR017930 -
Tpr6g3851 573 CDD SANT 65 108 IPR001005 -
Tpr6g3851 573 Gene3D - 61 113 - -
Tpr6g3851 573 SUPERFAMILY Homeodomain-like 111 207 IPR009057 -
Tpr6g3851 573 ProSiteProfiles Myb-like domain profile. 109 160 IPR001005 -
Tpr6g3851 573 Gene3D - 167 230 - -
Tpr6g3851 573 SMART sant 165 213 IPR001005 -
Tpr6g3851 573 SMART sant 61 110 IPR001005 -
Tpr6g3851 573 SMART sant 113 162 IPR001005 -
Tpr6g3851 573 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 164 IPR017930 -
Tpr6g3851 573 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 108 IPR017930 -
Tpr6g3851 573 MobiDBLite consensus disorder prediction 470 487 - -
Tpr6g3851 573 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Tpr6g3851 573 MobiDBLite consensus disorder prediction 260 296 - -
Tpr6g3851 573 CDD SANT 116 160 IPR001005 -
Tpr6g3851 573 CDD SANT 168 211 IPR001005 -
Tpr6g3851 573 MobiDBLite consensus disorder prediction 488 509 - -
Tpr6g3851 573 MobiDBLite consensus disorder prediction 437 469 - -
Tpr6g3851 573 Gene3D - 114 165 - -
Tpr6g3851 573 SUPERFAMILY Homeodomain-like 63 118 IPR009057 -
Tpr6g3851 573 Pfam Myb-like DNA-binding domain 166 209 IPR001005 -
Tpr6g3851 573 Pfam Myb-like DNA-binding domain 114 160 IPR001005 -
Tpr6g3851 573 Pfam Myb-like DNA-binding domain 62 108 IPR001005 -
Tpr6g3851 573 PANTHER MYB PROTEIN-RELATED 27 485 - -
Tpr6g3851 573 PANTHER MYB-RELATED PROTEIN B-LIKE 27 485 - -
Tpr6g3851 573 ProSiteProfiles Myb-like domain profile. 57 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3851 Tpr-Chr6 43767530 43776519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3851 52 545 MYB Transcription Factor Family AT5G02320 50.977 3.34e-146 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g3851 Myb_DNA-bind_6 4.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3851 K09422 - gmx:100793280 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3851 6 43767530 43776519 Tpr6g3851 6 43767530 43776519 ECH